SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia필라델피아 입원 환자의 공간 및 시간에 따른 SARS-CoV-2 게놈 변이Research Article Published on 2021-01-192022-09-10 Journal: mBio [Category] 변종, 유전자 메커니즘, 치료기술, [키워드] accelerated accumulation B.1 circulating city clade collected comparison coronavirus COVID-19 Critical D614G substitution disease Epidemic First wave followed by Genome genome sequence Genome sequences Genome sequencing GISAID hospitalized patient hospitalized patients infected individual infected individuals Infection initial isolate isolates Lineage lineages midsummer Multiple New York Nextstrain outbreak outcome patients Philadelphia polymorphism Polymorphisms respiratory Respiratory Coronavirus SARS-CoV-2 SARS-COV-2 infection sequence sequences Sequencing severe acute respiratory coronavirus Space Spread spring the epidemic time Transmission understanding variant Viral viral spike [DOI] 10.1128/mBio.03456-20 PMC 바로가기 [Article Type] Research Article
An Observational Laboratory-Based Assessment of SARS-CoV-2 Molecular Diagnostics in Benin, Western Africa서아프리카 베냉에서 SARS-CoV-2 분자 진단에 대한 관찰 실험실 기반 평가Observational Study Published on 2021-01-132022-09-10 Journal: mSphere [Category] MERS, 변종, 임상, 진단, 치료기술, 치료제, [키워드] activities acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 African Amplicon sequencing Analytical specificity assessment average B.1 Benin cell culture supernatant characterized Chinese circulation clinical samples clinical sensitivity comparable coronavirus coronavirus disease country COVID-19 COVID-19 pandemic D614G diagnostic diagnostics domain endemic human coronavirus endemic human coronaviruses Europe European foundation genomic Genomic surveillance HCoVs in vitro increase in introduced Jack Ma Laboratory Month N gene N genes National ORF1 ORF1ab overload pandemic performed positive sample reaction regions respiratory resulting RT-PCR RT-PCR kit SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 genomic surveillance SARS-CoV-2 lineage SARS-CoV-2 test SARS-CoV-2 tests severe acute respiratory syndrome Coronavirus similarity spike mutation Spike protein Spread Support target target region target regions test results Transmissibility variant West Africa [DOI] 10.1128/mSphere.00979-20 PMC 바로가기 [Article Type] Observational Study
First COVID-19 case in Zambia – Comparative phylogenomic analyses of SARS-CoV-2 detected in African countries잠비아 최초의 COVID-19 사례 - 아프리카 국가에서 발견된 SARS-CoV-2의 비교 계통 분석Case Reports Published on 2021-01-012022-09-11 Journal: International Journal of Infectious Diseases [Category] SARS, 치료기술, [키워드] activity African Analysis applied B.1 B.1.1 lineage caused China Community Comparative Contact tracing country COVID-19 COVID-19 case Diagnosis Disease surveillance Epidemic epidemic disease Europe Evolution of SARS-CoV-2 France genome sequence Health care Health care worker health care workers incidence of COVID-19 individual initial Lineage lineage B.1.1 MONITOR National Novel coronavirus novel coronavirus SARS-CoV-2 phylogenetic analyses predominant preparation resulting SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 strain SARS-CoV-2 strains South Africa Spread spread to Surveillance sustained the patient Travel while Wuhan Wuhan, China Zambia [DOI] 10.1016/j.ijid.2020.09.1480 PMC 바로가기 [Article Type] Case Reports
Genomic epidemiology reveals multiple introductions and spread of SARS-CoV-2 in the Indian state of Karnataka게놈 역학은 인도 카르나타카 주에서 SARS-CoV-2의 여러 도입 및 확산을 보여줍니다Research Article Published on 2020-12-172022-08-13 Journal: PLoS ONE [Category] MERS, SARS, 유전자 메커니즘, [키워드] acute respiratory syndrome coronavirus approach Asia B.1 B.1.1 B.6 China circulating Cluster Clusters Combination Contact Contact tracing coronavirus coronavirus 2 epidemiological Epidemiology Europe followed by Genome genomic genomic data index case India Infection information International Iran Lineage lineages Local local spread outbreak pangolin reported respiratory reveal SARS-CoV-2 sequence Seven Severe acute respiratory syndrome severe acute respiratory syndrome coronavirus 2 south India Spread symptomatic Transmission Travel Viral viral evolution virus [DOI] 10.1371/journal.pone.0243412 PMC 바로가기 [Article Type] Research Article
SARS-CoV-2 lineage B.6 was the major contributor to early pandemic transmission in MalaysiaSARS-CoV-2 계통 B.6은 말레이시아에서 초기 전염병 전파의 주요 기여자였습니다.Research Article Published on 2020-11-302022-08-13 Journal: PLoS Neglected Tropical Diseases [Category] SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] Accuracy analysed Asia Asia-Pacific Asian B.1 B.1.1 B.6 can be used cause clinical community transmission confirmed case contributed correlated country COVID-19 COVID-19 case COVID-19 cases COVID-19 pandemic diagnostic diagnostic test Direct epidemiological link Epidemiology Genetic Genetic epidemiology genome sequence Genome sequence data Genome sequences genomic GISAID database identify increase Increases increases in India Lineage Local Malaysia mass molecular assays Molecular epidemiology MONITOR Mutation Nsp3 onward transmission over pandemic participant Patient performed phylogenetic analyses Phylogenetic analysis predominant Prevention and control provide real-time PCR assay reduced Registration reported SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 transmission second wave sensitivity sequence spike spikes Spread spread of COVID-19 strain subsequent Surveillance Transmission Travel virus virus spread viruses whole genome whole genome sequence [DOI] 10.1371/journal.pntd.0008744 PMC 바로가기 [Article Type] Research Article
Spatio-Temporal Mutational Profile Appearances of Swedish SARS-CoV-2 during the Early PandemicArticle Published on 2020-09-142022-10-28 Journal: Viruses [Category] COVID-19, SARS, [키워드] analyzed appearance approaches B.1 B.1.1 Bayesian characterization community transmission COVID-19 pandemic diagnostic Evolution Evolutionary rate Frequency Genetic variant GISAID indicated knowledge Mutation pandemic Phylogenetic analysis Positive selection predominant profile Protein provide Region SARS-CoV-2 SARS-CoV-2 sequence SARS-CoV-2 variant spike Spike protein Spread Substitution Swedish variant viral pathogenesis viral variant virus [DOI] 10.3390/v12091026 PMC 바로가기 [Article Type] Article