Origin of imported SARS-CoV-2 strains in The Gambia identified from whole genome sequences전체 게놈 서열에서 확인 된 감비아에서 수입 된 SARS-COV-2 균주의 기원Research Article Published on 2021-08-312022-09-10 Journal: PLoS ONE [Category] MERS, SARS, 치료기술, [키워드] addition Analysis approach Asian baseline baseline data Contact contribute COVID-19 determine Economy European genomic genomic data global pandemic Health care Health care system health care systems index case index cases Infection information Local origin Phylogenetic analysis populations positive SARS-CoV-2 SARS-CoV-2 detection SARS-CoV-2 disease SARS-CoV-2 strain SARS-CoV-2 virus sequenced Sequencing shown source of infection strain sub-Saharan Africa subsequent the SARS-CoV-2 virus Transmission Travel WGS while whole genome whole genome sequence Whole genome sequencing Wuhan Wuhan, China [DOI] 10.1371/journal.pone.0241942 PMC 바로가기 [Article Type] Research Article
Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health WorkerMedicine Published on 2021-08-202022-10-31 Journal: Frontiers in Medicine [Category] COVID-19, [키워드] acute phase reactants Alpha variant blood test breakthrough Breakthrough infection breakthrough infections breakthrough reinfection caused chest imaging clinical care clinical history Complete concern COVID-19 Delta delta variant Hospitalization hypoxia Immunity index case Infection Mild occurred Patient positive sample post vaccination Reinfection retrieved RT-PCR SARS-CoV-2 SARS-CoV-2 infections Sequencing Seroconversion serology Seven supported the patient vaccination VoC WGS whole genome Whole genome sequencing worker [DOI] 10.3389/fmed.2021.737007 PMC 바로가기 [Article Type] Medicine
Overlapping of Independent SARS-CoV-2 Nosocomial Transmissions in a Complex OutbreakResearch Article Published on 2021-08-042022-10-30 Journal: mSphere [Category] COVID-19, MERS, SARS, [키워드] Analysis assumption Care carried caused clinician Clusters complex COVID-19 discriminatory power epidemiological epidemiological finding Fatality rate FIVE gastroenterology Genomic epidemiology Health health care workers homogeneous hospital in-depth analysis independent indication infecting Infection initial Initially involved limitations Measures nosocomial nosocomial COVID-19 nosocomial outbreak Nosocomial transmission occurred offered outbreak overlapping Patient Personal protective equipment Perspective required SARS-CoV-2 SARS-CoV-2 strain second wave secondary case Sequencing severity strain Strains the SARS-CoV-2 Transmission transmission cluster virulent WGS [DOI] 10.1128/mSphere.00389-21 PMC 바로가기 [Article Type] Research Article
The Emergence and Spread of Novel SARS-CoV-2 Variants새로운 SARS-CoV-2 변이체의 출현과 확산Public Health Published on 2021-08-022022-09-11 Journal: Frontiers in Public Health [Category] MERS, SARS, 변종, 진단, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus-2 Affect Analysis ArcGIS B.1.1.7 B.1.351 caused changes in Characteristics Coronavirus-2 distribution E484K emergence Epidemiology frequencies Frequency Genotype GISAID immune response K417N Laboratory MONITOR mutant mutant frequencies Mutation mutations N501Y natural infection Neutralizing antibodies novel other variants P.1 prevalent reduce respiratory S protein SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2 variants sensitivity Sequencing Severe acute respiratory syndrome severe acute respiratory syndrome Coronavirus Spike protein Spread subtype Vaccine variants Viral viral gene viral genes WGS whole genome Whole genome sequencing [DOI] 10.3389/fpubh.2021.696664 PMC 바로가기 [Article Type] Public Health
Rapid SARS-CoV-2 variant monitoring using PCR confirmed by whole genome sequencing in a high-volume diagnostic laboratory대용량 진단 실험실에서 전체 게놈 시퀀싱으로 확인된 PCR을 이용한 신속한 SARS-CoV-2 변이체 모니터링Article Published on 2021-08-012022-09-11 Journal: Journal of Clinical Virology [Category] SARS, 변종, 치료기술, [키워드] airway B.1.1.7 B.1.351 continuous surveillance diagnostic effective identity immune evasion introduced Laboratory P.1 pandemic Patient PCR positive positive sample protocol Rapid required SARS-CoV-2 SARS-CoV-2 variant Sequencing Study design Surveillance tested Transmission variant Variants screening WGS whole genome Whole genome sequencing Whole genome sequencing (WGS) [DOI] 10.1016/j.jcv.2021.104906 PMC 바로가기 [Article Type] Article
Investigation of an outbreak of symptomatic SARS-CoV-2 VOC 202012/01-lineage B.1.1.7 infection in healthcare workers, Italy이탈리아 의료 종사자의 증상 SARS-CoV-2 VOC 202012/01-lineage B.1.1.7 감염 발생 조사Article Published on 2021-08-012022-09-11 Journal: Clinical microbiology and infection : the official [Category] MERS, SARS, 변종, 진단, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Administered Anti-spike Antigen antigen tests B.1.1.7 BNT162b2 BNT162b2 vaccine carried circulation coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 Diagnosis doses Efficacy Endotracheal intubation Epidemiological investigation Europe Genetic HCW HCWs healthcare healthcare worker Healthcare workers high risk highlight hospital hospitals IgG IgG anti-Spike antibodies IgG anti-spike antibody Immune Serum immunization implementation IMPROVE Infection investigation involved Italy Mild symptom mild symptoms MINI mRNA vaccine National Neutralizing antibodies outbreak Patient PCR performed Personal protective equipment physician PPE Protein Real-time PCR required respiratory SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 lineage SARS-CoV-2 variants SARS-CoV-2 VOC 202012/01-LINEAGE B.1.1.7 second dose Sequencing serological test Serological tests severe acute respiratory syndrome Coronavirus severe COVID-19 subject Surveillance symptom onset symptomatic titre titres transmission of SARS-CoV-2 Vaccine variants virus strain VoC VOC 202012/01 WGS whole-genome sequencing [DOI] 10.1016/j.cmi.2021.05.007 PMC 바로가기 [Article Type] Article
A Sanger-based approach for scaling up screening of SARS-CoV-2 variants of interest and concern관심 및 우려의 SARS-CoV-2 변종에 대한 스크리닝을 확대하기 위한 Sanger 기반 접근 방식Article Published on 2021-08-012022-09-11 Journal: Infection, genetics and evolution : journal of mol [Category] SARS, 변종, [키워드] A570D approach B.1.1 characteristic characterized COVID-19 pandemic COVID-19 sample E484K evaluated Frame genetic material identify Laboratory limitation Lineage lineages molecular molecular surveillance N501Y new SARS-CoV-2 P.1 P.2 Patient PCR protocol protocols public health RBD reagent Sanger sequencing SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 surveillance SARS-CoV-2 variant SARS-CoV-2 variants of concern Spread Surveillance Time frame variants of concern virus VoC VOCs WGS whole-genome sequencing worldwide pandemic [DOI] 10.1016/j.meegid.2021.104910 PMC 바로가기 [Article Type] Article
An implementation science approach to evaluating pathogen whole genome sequencing in public healthResearch Published on 2021-07-282022-10-31 Journal: Genome Medicine [Category] COVID-19, SARS, [키워드] Analysis approach assist can be used comprehensive evaluation contribute Critical detect disease element epidemiological evaluate Evaluation evaluator facilitator framework genomic genomic data Genomics Health Impact impacts implementation IMPROVE Infection prevention Infectious disease Intervention Laboratory Listeria Listeria monocytogene microbial Mycobacterium tuberculosis outbreak outcomes pathogen pathogen genomics Public public health respond Result resulting SARS-CoV-2 sequence Sequencing stages supplementary material Support Surveillance Tuberculosis utilised WGS whole genome [DOI] 10.1186/s13073-021-00934-7 PMC 바로가기 [Article Type] Research
Genomic epidemiological analysis of SARS-CoV-2 household transmissionShort Communications Published on 2021-07-192022-10-28 Journal: Access Microbiology [Category] COVID-19, [키워드] Analysis attack rate B.1 lineage baseline Characteristics circulating Cluster Co-infection Community contributed COVID-19 described diagnosed displaying epidemiological family Family cluster household transmission information Ireland Lineage Local Nasopharyngeal swab notable outbreak Outbreak investigation provide SARS-CoV-2 SARS-CoV-2 genome SARS-COV-2 infection SARS-CoV-2 infections SARS-CoV-2 viral Seven significantly Spread suggested Support Symptom symptomatic case Symptoms Transmission dynamics unlikely Vaccine variant Viral transmission virus WGS whole-genome sequencing Whole-Genome-Sequencing [DOI] 10.1099/acmi.0.000252 PMC 바로가기 [Article Type] Short Communications
Whole-genome sequencing of SARS-CoV-2 in Uganda: implementation of the low-cost ARTIC protocol in resource-limited settings우간다에서 SARS-CoV-2의 전체 게놈 시퀀싱: 자원이 제한된 환경에서 저비용 ARTIC 프로토콜 구현Research Article Published on 2021-07-192022-09-11 Journal: F1000Research [Category] MERS, SARS, 진단, 치료기술, [키워드] acute respiratory syndrome adoption ARTIC protocol Chain Reaction collected coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 demonstrated diagnosed disease disease outbreak foundation genomic sequence GISAID High-throughput sequencing imperative implementation individual initiative isolate Laboratory Lineage Makerere University optimization outbreak Phylogenetic polymerase chain polymerase chain reaction PRESIDE protocol public health Quantitative quantitative polymerase chain reaction rapid expansion resource respiratory retrieved reverse transcription RT-PCR RT-qPCR SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes selected sequenced Sequencing Severe acute respiratory syndrome submitted Transmission dynamics Uganda Viral WGS whole-genome whole-genome sequencing Wuhan Wuhan, China [DOI] 10.12688/f1000research.53567.1 PMC 바로가기 [Article Type] Research Article