Investigation of SARS-CoV-2 Epsilon Variant and Hospitalization Status by Genomic Surveillance in a Single Large Health System During the 2020-2021 Winter Surge in Southern California남부 캘리포니아의 2020-2021년 겨울 서지 동안 단일 대형 의료 시스템에서 게놈 감시에 의한 SARS-CoV-2 엡실론 변이체 및 입원 상태 조사Article Published on 2022-05-042022-09-11 Journal: American journal of clinical pathology [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Admission B.1.427 B.1.429 California collected coronavirus COVID-19 Epsilon Epsilon variant frequencies Frequency genomic Genomic surveillance health system Hospitalization hospitalized patients ICU ICU admission ICU patient ICU Patients intensive care intensive care unit investigation outpatients patients respiratory sample Respiratory samples SARS-CoV-2 severe acute respiratory syndrome Coronavirus severe disease status Surveillance System unique variant virulent was performed Winter [DOI] 10.1093/ajcp/aqab203 PMC 바로가기 [Article Type] Article
Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021델타에 의한 SARS-CoV-2 변이체의 신속한 교체 및 2021년 우간다 오미크론 도착Article Published on 2022-05-012022-09-11 Journal: Emerging Infectious Diseases [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 community transmission coronavirus coronavirus disease Coronaviruses COVID-19 deep sequencing Delta genomic Genomic surveillance highlight infection control measure omicron pandemic Prevent Rapid rapid replacement replacement Respiratory Coronavirus respiratory infections SARS-CoV-2 severe acute respiratory coronavirus severe acute respiratory coronavirus 2 severe acute respiratory syndrome Coronavirus Surveillance Uganda variant variants viruses whole-genome whole-genome deep sequencing zoonoses [DOI] 10.3201/eid2805.220121 PMC 바로가기 [Article Type] Article
Tracking SARS-CoV-2 variants by entire S-gene analysis using long-range RT-PCR and Sanger sequencing장거리 RT-PCR 및 Sanger 시퀀싱을 사용하여 전체 S-유전자 분석으로 SARS-CoV-2 변이체 추적Article Published on 2022-05-012022-09-11 Journal: Clinica chimica acta; international journal of cli [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] Alpha Alpha variant Amino acid amplified Analysis analyzed collected delta variant Delta variants determined by disease severity Effectiveness Genomic surveillance Japan Long Long-range RT-PCR molecular Mutation omicron Omicron variants performed replaced reported RNA RT-PCR S-gene Sanger sequencing SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 variant SARS-CoV-2 virus sequence single-stranded Surveillance the SARS-CoV-2 the SARS-CoV-2 virus Transmissibility unique university Vaccine variant variants variants of concern VoC VOCs was determined whole genome [DOI] 10.1016/j.cca.2022.03.014 PMC 바로가기 [Article Type] Article
First Identification of Reinfection by a Genetically Different Variant of SARS-CoV-2 in a Homeless Person from the Metropolitan Area of Santiago, Chile칠레 산티아고 수도권 노숙자에서 유전적으로 다른 SARS-CoV-2 변종에 의한 첫 번째 재감염 확인Article Published on 2022-04-272022-09-11 Journal: Journal of Environmental and Public Health [Category] COVID19(2023년), SARS, 변종, [키워드] Area Care clade component contagious country COVID-19 COVID-19 diagnosis COVID-19 pandemic Divergence form General population Genes genomic genomic sequencing Genomic surveillance groups Health Health care identification include Intensive limit Lineage local outbreaks Nextstrain occurred ORF1 ORF1ab Person Public Health Program Reinfection resurgence RT-qPCR SARS-CoV-2 SARS-CoV-2 infected patient SARS-CoV-2 infected patients SARS-COV-2 infection SARS-CoV-2 infections Sequencing Single nucleotide variant SNVs Support Surveillance traceability viral spread Viral variants virus [DOI] 10.1155/2022/3859071 PMC 바로가기 [Article Type] Article
The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in MexicoSARS-CoV-2의 알파 변종(B.1.1.7)은 멕시코에서 지배적이지 못했습니다.Article Published on 2022-04-272022-09-11 Journal: Microbiology Spectrum [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Alpha analyses analyzed B.1.1.7 B.1.1.7 lineage can not center circulation community transmission coronavirus coronavirus disease Coronavirus disease 2019 country COVID-19 dispersion distribution Diversity event events excluded exhibited Frequency genomic Genomic surveillance global public health Haplotype highest increase in independent Lineage lineages Mexico occurred pandemic Phylogenetic predominant Prevalence rapid increase reached reported SARS-CoV-2 severe acute respiratory syndrome Coronavirus shown specific mutation specific mutations Surveillance sustained The B.1.1.7 The United States Transmissibility Transmission United Kingdom United States [DOI] 10.1128/spectrum.02240-21 PMC 바로가기 [Article Type] Article
SARS-CoV-2 Lineage Tracking, and Evolving Trends Seen during Three Consecutive Peaks of Infection in Delhi, India: a Clinico-Genomic StudySARS-CoV-2 혈통 추적 및 인도 델리에서 3개의 연속 감염 피크 동안 관찰된 진화 추세: 임상-유전체 연구Article Published on 2022-04-272022-09-11 Journal: Microbiology Spectrum [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] added amplified B.1.617.2 can not Care caused circulating clade Clinical characteristics co-morbidity collected Community Course COVID-19 COVID-19 in Delhi COVID-19 tracking Delhi detect difference driven by enrolled Genome genome surveillance genomic Genomic surveillance Health Health care help Immune escape India Infection investigated less Lineage lineage tracking lineages Local median morbidity Mutation mutation type mutation types novel lineage pandemic peak processed provide reported SARS-CoV-2 SARS-CoV-2 lineages SARS-CoV-2 variants Sequencing shifting Spread subset Surveillance the patient trajectory Transmissibility trend Vaccines variant variants Variation virus widespread [DOI] 10.1128/spectrum.02729-21 PMC 바로가기 [Article Type] Article
SARS-CoV-2 Delta and Omicron Variants Surge in Curitiba, Southern Brazil, and Its Impact on Overall COVID-19 Lethality브라질 남부 쿠리티바에서 SARS-CoV-2 델타 및 오미크론 변종 급증, 전체 COVID-19 치사율에 미치는 영향Article Published on 2022-04-142022-09-11 Journal: Viruses [Category] COVID19(2023년), SARS, 변종, [키워드] affected Analysis assist Brazil Combination coronavirus correlated Course Coverage COVID-19 COVID-19 case COVID-19 pandemic Delta delta variant Diagnosis diagnostic diagnostic techniques and procedures dominant effort Environment evaluate evaluated fraction genomic Genomic surveillance genotyping Healthcare system Impact Infection infections less lethality lethality rate Multiple infection observé omicron pandemic performed positive public health reduction in RT-qPCR SARS-CoV-2 Screening Spread state strain Strains Surveillance symptomatic and asymptomatic translated university vaccination variant [DOI] 10.3390/v14040809 PMC 바로가기 [Article Type] Article
DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2DeepSARS: SARS-CoV-2의 동시 진단 탐지 및 게놈 감시Article Published on 2022-04-112022-09-11 Journal: BMC Genomics [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 진단, 치료기술, 치료제, [키워드] Alpha Beta Biorender.com capture change deep sequencing diagnostic diagnostic testing diagnostics Diversity foundation genomic Genomic surveillance Image integration Large-scale testing molecular NGS PCR performed phylogenetics platform population level Quantitative SARS-CoV-2 Sequencing Spread Strains Surveillance tracing transmission rate Vaccine variant variants Viral Viral detection viral evolution whole genome Whole genome sequencing [DOI] 10.1186/s12864-022-08403-0 PMC 바로가기 [Article Type] Article
Large Scale SARS-CoV-2 Molecular Testing and Genomic Surveillance Reveal Prolonged Infections, Protracted RNA shedding, and Viral Reinfections대규모 SARS-CoV-2 분자 테스트 및 게놈 감시를 통해 장기간 감염, 장기간 RNA 방출 및 바이러스 재감염이 밝혀졌습니다.Article Published on 2022-04-112022-09-11 Journal: Frontiers in Cellular and Infection Microbiology [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 진단, [키워드] acquisition Biology biology of SARS-CoV-2 Cell culture Clinical data collected Coverage cycle Cycle threshold values Deletion deletions diagnostic Epidemics Extended first positive Frame genomic Genomic surveillance highlight identify Immunocompromised patients Immunosuppressed immunosuppressed patients Infection infections Infectious virus initial Johns Hopkin Johns Hopkins Laboratory lack molecular Molecular diagnosis notable Pandemics Patient positive positive result precedent Prolonged Prolonged infection prolonged shedding Reinfection RNA SARS-CoV-2 SARS-CoV-2 genomic surveillance scale sequence Sequencing specimens Substitution Surveillance Testing the median threshold value Time frame vaccination valuable resource variants Viral viral clade viral variant Viral variants viruses were used whole genome Whole genome sequencing [DOI] 10.3389/fcimb.2022.809407 PMC 바로가기 [Article Type] Article
Genome Profiling of SARS-CoV-2 in Indonesia, ASEAN and the Neighbouring East Asian Countries: Features, Challenges and Achievements인도네시아, 아세안 및 주변 동아시아 국가에서 SARS-CoV-2의 게놈 프로파일링: 기능, 도전 및 성과Article Published on 2022-04-082022-09-11 Journal: Viruses [Category] COVID19(2023년), SARS, 변종, 진단, [키워드] achievement ASEAN Biology biology of SARS-CoV-2 Biotechnology center challenge Clinical research collaboration country COVID-19 COVID-19 pandemic defined delta variant Delta variants East Asian Epidemiology facilitated Frequency Genome genomic Genomic surveillance GISAID highest Indonesia Innovation Interaction Japan Lineage Metadata Mutation N439K Nanopore NICCRAT ONT Open Access outbreak Oxford Phylogenetic analysis predominant Profiling SARS- CoV-2 SARS-CoV-2 SARS-CoV-2 virus Sequencing Singapore spike gene Surveillance team technology training Travel unique university variant variants variants of concern virus virus transmission WGS whole-genome sequencing [DOI] 10.3390/v14040778 PMC 바로가기 [Article Type] Article