SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021—Implementation of Swiss-Wide Diagnostic Screening and Whole Genome SequencingArticle Published on 2021-03-252022-10-29 Journal: Microorganisms [Category] COVID-19, [키워드] Amplicon sequencing analysed B.1.1.7 B.1.351 Brazil Community COVID-19 described diagnostic epidemiological event Genome implementation Lineage Molecular epidemiology multiple laboratories Mutation N501Y P.1 PCR Phylogenetic analysis positive protocol public health rapid increase recommendation reported researchers SARS-CoV-2 Screening Sequencing South Africa Spread subsequent Surveillance Switzerland the SARS-CoV-2 variant variants of concern VOCs WGS whole genome [DOI] 10.3390/microorganisms9040677 PMC 바로가기 [Article Type] Article
Clinical, Serological, Whole Genome Sequence Analyses to Confirm SARS-CoV-2 Reinfection in Patients From Mumbai, IndiaMedicine Published on 2021-03-092022-10-31 Journal: Frontiers in Medicine [Category] COVID-19, [키워드] absence amino acid sequence analyses Analysis clades clinical collected Comparative COVID-19 criteria downstream duration of illness Evidence functional annotation Genome genome coverage genome variation genomic genomic variation IgG Immunity India individual information mandatory molecular Mumbai Neutralizing Non-synonymous nucleotide Oropharyngeal Patient patients Post-infection Prolonged infection Region Reinfection reported RNA RT-PCR tests S1 RBD SARS-CoV-2 SARS-COV-2 infection sequence Sequencing Seroconversion serological serology specific mutation supported sVNT symptomatic synonymous the SARS-CoV-2 genome upstream viral isolate virus was performed WGS while Whole blood whole genome Whole genome sequencing [DOI] 10.3389/fmed.2021.631769 PMC 바로가기 [Article Type] Medicine
A Half-Day Genome Sequencing Protocol for Middle East Respiratory Syndrome CoronavirusMicrobiology Published on 2021-02-192022-10-31 Journal: Frontiers in Microbiology [Category] COVID-19, [키워드] amplified applied clinical sample Complete contribute coronavirus CoV CoV genome develop Diagnosis Epidemics Genome MERS MERS (middle east respiratory syndrome) MERS-CoV MERS-CoV genome Middle East MinION long-read sequencing Mutation outbreak Outbreaks PCR primer protocol public health recent respiratory Result sequence sequenced Sequencing serum samples syndrome universal primer variant Variation WGS whole genome whole-genome sequencing [DOI] 10.3389/fmicb.2021.602754 PMC 바로가기 [Article Type] Microbiology
Clinical and whole genome characterization of SARS-CoV-2 in India인도에서 SARS-CoV-2의 임상 및 전체 게놈 특성화Research Article Published on 2021-02-022022-09-10 Journal: PLoS ONE [Category] MERS, 변종, [키워드] A2a ACE2 Analysis binding affinities binding affinity blood urea cardiovascular disease clinical Comorbidities D614G decrease deficiency diabetes disease severity Europe functional GISAID heart Host hypertension immune increase India Infection International isolate kidney liver lymphocyte Lymphocyte count lymphocyte counts Lymphocytes Middle East neutrophil neutrophil count neutrophil counts nine organ damage Patient patients with SARS Phylogeny predicted recovered patients reported S protein SARS CoV SARS CoV-2 infection SARS-CoV-2 Seven Severe infection severity SGOT SGPT the disease Transmission Travel urea virus isolate WBC WGS whole genome whole genome sequence Wuhan [DOI] 10.1371/journal.pone.0246173 PMC 바로가기 [Article Type] Research Article
Carbapenemase-producing Enterobacterales causing secondary infections during the COVID-19 crisis at a New York City hospital뉴욕시 병원에서 COVID-19 위기 동안 2차 감염을 유발하는 Carbapenemase 생성 EnterobacteralesArticle Published on 2021-01-192022-09-11 Journal: Journal of Antimicrobial Chemotherapy [Category] 유전자 메커니즘, 치료기술, 치료제, [키워드] Antibiotic resistance antibiotic resistance gene Bacterial infections Clinical characteristics collected COVID-19 crisis COVID-19 patients CPE Culture declined Enterobacter cloacae complex genotyping global pandemic hospital Illumina Increased increased risk isolate isolates Klebsiella pneumoniae KPC Lineage MDR mechanism mitigate MOST Most patient Most patients Nanopore nanopore sequencing New York City pathogen Pathogens Patient patients patients with COVID-19 Phylogenetic analysis pneumoniae positive Prevalence respiratory SARS-CoV-2 secondary bacterial infection Secondary bacterial infections Secondary infection secondary infections Sequencing sequencing data Surveillance Treatment treatment approach treatment failure wake WGS while with COVID-19 [DOI] 10.1093/jac/dkaa466 PMC 바로가기 [Article Type] Article
Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, IndonesiaBioinformatics Published on 2020-12-212022-10-28 Journal: PeerJ [Category] COVID-19, [키워드] Analysis appear applied Asia circulating clade Cluster collected Complete COVID-19 COVID-19 patient COVID-19 situation D614G mutation dataset dissemination distribution Europe full-length full-length genome sequence Genome GISAID Hospitalized Illumina Miseq Indonesia NC_045512.2 Next-generation sequencing NGS Patient Phylogenetic analysis reference genome Region Result retrieved SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 virus SARS-CoV-2 virus strain sequence severity variant virus virus genome virus sample was performed WGS Whole genome sequencing [DOI] 10.7717/peerj.10575 PMC 바로가기 [Article Type] Bioinformatics
Timely intervention and control of a novel coronavirus (COVID-19) outbreak at a large skilled nursing facility—San Francisco, California, 2020Original Article Published on 2020-12-142022-10-30 Journal: Infection Control and Hospital Epidemiology [Category] COVID-19, MERS, SARS, [키워드] acute respiratory syndrome Characteristics close contact cohort study collected conducted confirmed cases coronavirus COVID-19 face masking genomic implementation Interaction Intervention Isolation Lineage lineages MOST Novel coronavirus outbreak PPE PPS Prevalence Respirator respiratory specimen San Francisco SARS-CoV-2 SARS-CoV-2 isolate SARS-CoV-2 transmission surgical Symptom tested Transmission was performed was used WGS whole-genome sequencing [DOI] 10.1017/ice.2020.1375 PMC 바로가기 [Article Type] Original Article
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysisArticle Published on 2020-12-092022-10-04 Journal: Nature Communications [Category] MERS, SARS, 변종, 유전자 메커니즘, [키워드] Accuracy Analysis controls coronavirus 2 Coverage COVID-19 Critical detect elevated error rate Evidence Evolution facilitate frequencies Illumina improvement INDEL International Local Nanopore nanopore sequencing National Next-generation sequencing ONT Oxford Nanopore Technology Patient platform Precision provide public health respiratory RNA SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 surveillance sensitivity sequence Sequencing sequencing reads short-read sequencing Single nucleotide variant SNVs specimen Structural variation supported Transmission Validity variant Viral genetics WGS whole-genome sequencing widespread [DOI] 10.1038/s41467-020-20075-6 PMC 바로가기 [Article Type] Article
Rapid Fulminant Progression and Mortality Secondary to Aeromonas dhakensis Septicemia with Hepatitis B Virus Infection Following the Ingestion of Snakehead Fish in Mainland China: A Case ReportCase Reports Published on 2020-12-012023-06-13 Journal: Foodborne pathogens and disease [Category] B형 간염, [키워드] Aeromonas dhakensis fulminant death Hepatitis B virus septicemia WGS [DOI] 10.1089/fpd.2019.2780 [Article Type] Case Reports
Why psychiatry is different – challenges and difficulties in managing a nosocomial outbreak of coronavirus disease (COVID-19) in hospital careResearch Published on 2020-12-012022-10-28 Journal: Antimicrobial Resistance and Infection Control [Category] COVID-19, MERS, SARS, [키워드] acute respiratory syndrome Admitted Patient analyzed Care case sery caused contributed coronavirus coronavirus disease COVID-19 determine disease Europe Factor HCW healthcare worker hospital Hospital outbreak management Hospital psychiatry Infectious disease Intervention involved knowledge less management measure Measures mental health more difficult Netherland nosocomial nosocomial outbreak objective outbreak pandemic PCR polymerase chain Psychiatric Psychiatric patient psychiatry reported Result SARS-CoV-2 Sequencing susceptible Transmission transmissions WGS whole genome [DOI] 10.1186/s13756-020-00853-z PMC 바로가기 [Article Type] Research