Covidex: An ultrafast and accurate tool for SARS-CoV-2 subtypingCovidex: SARS-CoV-2 하위 유형 지정을 위한 빠르고 정확한 도구Article Published on 2022-04-012022-09-11 Journal: Infection, genetics and evolution : journal of mol [Category] COVID19(2023년), SARS, 변종, [키워드] concern epidemiological epidemiological surveillance GISAID interest lineages machine machine learning Neutralizing antibodies Nextstrain pathogen Phenotypes Program reduced SARS-CoV-2 SARS-CoV-2 genome sequence SARS-CoV-2 genome sequences sequence shown subtype Subtypes Subtyping Surveillance susceptibility Transmissibility variants viral lineage virus VoC VOI web application Web-application. whole-genome sequencing [DOI] 10.1016/j.meegid.2022.105261 PMC 바로가기 [Article Type] Article
Increased transmission of SARS-CoV-2 in Denmark during UEFA European championshipsUEFA 유럽 선수권 대회 기간 동안 덴마크에서 SARS-CoV-2 전파 증가Article Published on 2022-03-232022-09-11 Journal: Epidemiology and Infection [Category] SARS, 변종, [키워드] adjusted B.1.1.7 B.1.617.2 Cohort cohort study conducted connection Contact tracing contributed covariate covariates declining Delta Denmark dominant Epidemiology European event Hypothesis incidence rate Increased information Lineage mass events National occurred positive public health rate ratio reduced replacement SARS-CoV-2 SARS-CoV-2 test Support These data tournament Transmission transmission of SARS-CoV-2 transmissions vaccination rate vaccination rates was collected were used whole-genome sequencing [DOI] 10.1017/S095026882200019X PMC 바로가기 [Article Type] Article
Analytical Sensitivity of Six SARS-CoV-2 Rapid Antigen Tests for Omicron versus Delta Variant오미크론 대 델타 변이체에 대한 6가지 SARS-CoV-2 신속 항원 테스트의 분석 민감도Article Published on 2022-03-222022-09-11 Journal: Viruses [Category] SARS, 변종, 치료기술, 치료법, [키워드] affecting Antigen antigen detection Ct values Delta diagnosis of SARS-CoV-2 infections lineages log median Mutation nucleocapsid protein omicron pharmacies presenting qPCR ranged Rapid Roche RT-qPCR SARS-CoV-2 SARS-CoV-2 infections selected sensitivity strain Strains Swab swabs Test tested variant variants of concern Viral load viral loads VoC whole-genome sequencing [DOI] 10.3390/v14040654 PMC 바로가기 [Article Type] Article
Molecular Epidemiology of SARS-CoV-2 in Tunisia (North Africa) through Several Successive Waves of COVID-19COVID-19의 여러 연속적인 물결을 통한 튀니지(북아프리카)의 SARS-CoV-2 분자 역학Article Published on 2022-03-172022-09-11 Journal: Viruses [Category] MERS, SARS, 변종, 유전자 메커니즘, 진단, 치료기술, [키워드] African Alpha Alpha VOC assigned Beta characterized circulating circulation combating contributing to COVID-19 deaths Delta Delta VOC Documenting Eta First wave genetic information genomic data global effort global efforts highlight Infection Lineage lineages molecular molecular characterization Next-generation sequencing North pandemic partial sequencing positive sample provide real-time RT-PCR Region RT-PCR tests S gene SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2 variants second wave Sequencing spike gene Strains Tunisia variant variant of concern variant of interest variants variants of concern variants of interest virus transmission VOCs VOIs Wave whole-genome sequencing Zeta [DOI] 10.3390/v14030624 PMC 바로가기 [Article Type] Article
Genomic Epidemiology and Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Congregate Healthcare Facilities in Santa Clara County, California캘리포니아 산타클라라 카운티의 집단 의료 시설에서 발생한 중증 급성 호흡기 증후군 코로나바이러스 2(SARS-CoV-2)의 게놈 역학 및 전파 역학Article Published on 2022-03-092022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 유전자 메커니즘, 치료기술, 치료제, [키워드] accounted Analysis Care carried component conducted confirmed COVID-19 case coronavirus 2 death Dynamics elderly Epidemiological investigation Epidemiology facility genomic sequencing Genomics healthcare index case infection control Lineage Long-term care mapping morbidity and mortality outbreak Outbreak investigation Outbreaks pattern phylogenetic analyses Phylogenetic analysis providers. reduce respiratory risk Safe SARS-CoV-2 SARS-CoV-2 testing study period Surveillance sustained Transmission triggering Viral transmission Whole-genome sequence whole-genome sequences whole-genome sequencing [DOI] 10.1093/cid/ciab553 PMC 바로가기 [Article Type] Article
Impact of SARS-CoV-2 Alpha variant (B.1.1.7) on prisons, EnglandSARS-CoV-2 알파 변종(B.1.1.7)이 영국 교도소에 미치는 영향Article Published on 2022-03-012022-09-11 Journal: Public health [Category] SARS, 변종, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus Alpha Alpha variant attack rate B.1.1.7 COG-UK coronavirus COVID-19 COVID-19 case COVID-19 infection COVID-19 outbreak England FIVE genomic information hospitalisation hospitalisations Impact Infectious disease infectious disease outbreak interquartile range IQR Laboratory likelihood outbreak Outbreaks prison prisons required reservoir reservoirs SARS-CoV-2 second wave Sequencing severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus 2 the median vaccination variant variants variants of concern whole-genome sequencing [DOI] 10.1016/j.puhe.2021.12.018 PMC 바로가기 [Article Type] Article
Novel Hendra Virus Variant Detected by Sentinel Surveillance of Horses in AustraliaArticle Published on 2022-03-012023-08-30 Journal: Emerging Infectious Diseases [Category] E형 간염, [키워드] Central nervous system Hendra henipavirus Hendra virus horse diseases meningitis/encephalitis one health PCR RNA sequencing sentinel species sentinel surveillance Syncytia Syndromic surveillance transdisciplinary research Vasculitis viral encephalitis viruses whole-genome sequencing zoonoses [DOI] 10.3201/eid2803.211245 PMC 바로가기
Genomic surveillance reveals the detection of SARS-CoV-2 delta, beta, and gamma VOCs during the third wave in Pakistan게놈 감시를 통해 파키스탄의 제3의 파도 동안 SARS-CoV-2 델타, 베타 및 감마 VOC의 검출이 밝혀졌습니다.Article Published on 2022-03-012022-09-11 Journal: Journal of medical virology [Category] SARS, 변종, 유전자 메커니즘, 치료기술, 치료제, [키워드] Alpha Alpha variant amplification Azad Kashmir Beta Beta variant circulating circulation close monitoring COVID-19 delta variant detect followed by Gamma variant gene amplification genomic Genomic surveillance information Intervention Italy Karachi Lineage lineage-specific spike mutations Local Mutation national health authorities national health authority Non-synonymous pandemic positive Prevalence provide Randomly reported reveal SARS-CoV-2 SARS-CoV-2 delta SARS-CoV-2 lineage SARS-CoV-2 variants selected specific spike mutations spike gene spike mutation Spread subset tested Transmissibility variant variants variants of concern VoC VOCs whole-genome sequencing [DOI] 10.1002/jmv.27429 PMC 바로가기 [Article Type] Article
Interplay between Klebsiella pneumoniae producing KPC-31 and KPC-3 under treatment with high dosage meropenem: a case report고용량 메로페넴으로 치료 중인 KPC-31을 생성하는 Klebsiella pneumoniae와 KPC-3 사이의 상호작용: 증례 보고Case Reports Published on 2022-03-012022-09-11 Journal: European Journal of Clinical Microbiology & Infect [Category] 변종, [키워드] avibactam carbapenem Case report Ceftazidime Ceftazidime-avibactam collected conditions conserved dosage Evolution Fever High dose Hospitalization Illumina Infection Klebsiella pneumoniae KPC meropenem Nanopore nanopore sequencing occurred Patient performed pneumoniae presenting producing Pulmonary infection remained Rome SARS-CoV2 selected Sequencing strain Strains susceptible Symptoms the patient Therapies treated Treatment Umberto variant were used whole-genome sequencing [DOI] 10.1007/s10096-021-04388-y PMC 바로가기 [Article Type] Case Reports
Genomic characterization unravelling the causative role of SARS-CoV-2 Delta variant of lineage B.1.617.2 in 2nd wave of COVID-19 pandemic in Chhattisgarh, India인도 차티스가르(Chhattisgarh)에서 발생한 COVID-19 대유행의 2차 물결에서 SARS-CoV-2 혈통 B.1.617.2의 델타 변이형의 원인 역할을 밝히는 게놈 특성 분석Article Published on 2022-03-012022-09-11 Journal: Microbial pathogenesis [Category] SARS, 변종, 유전자 메커니즘, [키워드] ACE2 receptor Alpha Alpha variant Antibody Response B.1 B.1.1.7 B.1.617.1 B.1.617.2 catastrophic categories Chhattisgarh cleaving co-occurrence COVID-19 COVID-19 pandemic D614G D950N dead dead patient Deceased Deletion Delta delta variant ENhance Evolution FIVE furin furin site G142D genomic genomic data HCW healthcare worker help India Intensive L452R Lineage Lineage B.1.1.7 Mild nine outbreak P681R pandemic Patient patients predominant Replication required S1/S2 SARS-CoV-2 SARS-CoV-2 variant second second wave Sequencing spike mutation Surveillance T19R T478K the SARS-CoV-2 Transmissibility Vaccine variant VoC was performed were infected whole-genome sequencing [DOI] 10.1016/j.micpath.2022.105404 PMC 바로가기 [Article Type] Article