Monitoring the SARS-CoV-2 pandemic: screening algorithm with single nucleotide polymorphism detection for the rapid identification of established and emerging variantsSARS-CoV-2 대유행 모니터링: 확립된 변이체 및 신규 변이체의 신속한 식별을 위한 단일 염기 다형성 검출을 통한 스크리닝 알고리즘Article Published on 2022-01-012022-09-11 Journal: Clinical microbiology and infection : the official [Category] SARS, 변종, 치료기술, 치료제, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Algorithm Alpha applied assessment Beta Chain Reaction Concordance coronavirus coronavirus disease Coronavirus disease 2019 Delta determine disease E484K Epsilon Eta evaluate evaluated failure flexible Gamma gene mutations H655Y identify include L452R Lineage Local melting melting curve analysis monitoring Multiplex PCR N501Y nucleic acid testing P681R pangolin Pangolin lineage PCR performed polymerase chain reaction polymorphism positive sample S-gene mutation S-gene mutations SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 viral RNA Sequencing Severe acute respiratory syndrome severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus 2 Severe acute respiratory syndrome coronavirus 2 variants single nucleotide Single nucleotide polymorphism SNP SNPs target Testing Testing algorithm the SARS-CoV-2 variant variants Viral RNA was performed WGS whole-genome sequencing [DOI] 10.1016/j.cmi.2021.09.007 PMC 바로가기 [Article Type] Article
Complex infections in vivax malaria: the more you look, the more you findarticle Published on 2021-12-312024-09-01 Journal: Trends in Parasitology [Category] 말라리아, [키워드] genotyping malaria Plasmodium vivax single-cell sequencing whole-genome sequencing [Article Type] article
Historical, current, and emerging tools for identification and serotyping of Shigellaarticle Published on 2021-12-312024-09-01 Journal: Brazilian Journal of Microbiology [Category] 세균성이질, [키워드] Escherichia coli identification serotyping Shigella spp whole-genome sequencing [Article Type] article
Clinical, Virological, Immunological, and Genomic Characterization of Asymptomatic and Symptomatic Cases With SARS-CoV-2 Infection in India인도에서 SARS-CoV-2 감염이 있는 무증상 및 무증상 사례의 임상, 바이러스, 면역 및 게놈 특성 분석Cellular and Infection Microbiology Published on 2021-12-212022-09-11 Journal: Frontiers in Cellular and Infection Microbiology [Category] MERS, SARS, 유전자 메커니즘, 치료법, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 addition Analysis antibody Asymptomatic asymptomatic and symptomatic patients asymptomatic patients biochemical biochemical parameter Biochemical parameters C-reactive protein carried caused CD40L changes in characterization circulating antibodies circulating antibody clinical collected Comorbidities contribute coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 CRP cytokine Cytokines D614G mutation determined by develop diabetes disease disease control disease severity effective Efficiency elevated ferritin genomic global pandemic hospitalized patient IFN-α2 IgA IgG IgM IL-1 IL-10 IL-15 IL-1α IL-6 IL-8 immunological implementation in viral India Infection IP-10 isolate Lactate lactate dehydrogenase LDH mDC Mutation no significant difference nucleocapsid protein Nucleocapsid proteins ORF1ab ORF3a ORF8 Oropharyngeal pathophysiology Patient plasma respiratory Result RT-PCR Sample SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 patient SARS-CoV-2 patients serum serum sample serum samples Seven severe acute respiratory syndrome Coronavirus severe SARS severe SARS-CoV-2 SGOT SGPT Spike protein symptomatic Symptomatic patients treatment regimen two groups two patients type 2 diabete type 2 diabetes Viral viral infection Viral load viral strain viral strains Virological virus replication was determined were assessed Whole-genome sequence whole-genome sequencing [DOI] 10.3389/fcimb.2021.725035 PMC 바로가기 [Article Type] Cellular and Infection Microbiology
A Novel High-Throughput Nanopore-Sequencing-Based Strategy for Rapid and Automated S-Protein Typing of SARS-CoV-2 VariantsCommunication Published on 2021-12-192022-10-28 Journal: Viruses [Category] COVID-19, SARS, [키워드] Amino acid amplification amplify Analysis approaches automated bioinformatics bottleneck diagnostic flow cell identify Immune escape immunodominant molecular Mutation Nanopore Next-generation sequencing novel offer primer primer pair protocol Rapid reduced region of interest required respiratory specimen restriction S-gene S-protein S-protein variant SARS-CoV-2 SARS-CoV-2 variant sequence sequenced sample Sequencing Strategy subsequent Surveillance typing vaccine escape validation variant variants VoC whole-genome whole-genome sequencing [DOI] 10.3390/v13122548 PMC 바로가기 [Article Type] Communication
Distribution and Genetic Diversity of Hepatitis E Virus in Wild and Domestic Rabbits in AustraliaArticle Published on 2021-12-172023-08-29 Journal: Pathogens [Category] E형 간염, [키워드] Genomic epidemiology Hepeviridae Luminex Rabbits Seroepidemiology serology whole-genome sequencing [DOI] 10.3390/pathogens10121637 PMC 바로가기 [Article Type] Article
First Detection of SARS-CoV-2 Delta (B.1.617.2) Variant of Concern in a Dog with Clinical Signs in SpainSARS-COV-2 델타 (B.1.617.2) 스페인의 임상 징후를 가진 개에서의 우려 변형의 첫 번째 탐지Case Reports Published on 2021-12-162022-09-01 Journal: Viruses [Category] Fulltext, SARS, 변종, 조류인플루엔자, 진단, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 animal B.1.617.2 caused clinical Clinical sign Clinical signs collected concern coronavirus COVID-19 Delta delta variant detection digestive dog indicated Infection Infectious disease Mild Neutralizing antibodies neutralizing antibody oropharyngeal swab pandemic pets predominant reported reservoir reservoirs respiratory reverse zoonosis SARS-CoV-2 SARS-CoV-2 variants Sequencing seroconverted severe acute respiratory syndrome Coronavirus SIGN Spain susceptibility Transmission variant variants of concern Viral Viral load VoC whole-genome sequencing [DOI] 10.3390/v13122526 PMC 바로가기 [Article Type] Case Reports
A Case Report: Genetically Distinct Severe Acute Respiratory Syndrome Coronavirus-2 Variant Causing ReinfectionMicrobiology Published on 2021-12-092022-10-31 Journal: Frontiers in Microbiology [Category] COVID-19, [키워드] acute infection Analysis B.1.1.7 Bangladesh bilateral consolidation C-reactive protein causing clade collected continuous monitoring COVID-19 eight elevated ferritin Genetic variation Genome Immunity Infection International Intervention Lineage management mild symptoms monoclonal antibodies Mutation nasopharyngeal sample natural infection occurred outcome pangolin Patient PROTECT RBD Reinfection respiratory SARS-CoV-2 SARS-CoV-2 strain strain the patient the receptor-binding domain Treatment vaccination Vaccine variant variants variants of SARS-CoV-2 whole-genome sequencing Wuhan-Hu-1 [DOI] 10.3389/fmicb.2021.792514 PMC 바로가기 [Article Type] Microbiology
Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequencesTechnical Note Published on 2021-12-022022-10-31 Journal: GigaScience [Category] COVID-19, SARS, [키워드] Amplicon cause complex condition Genome genomes IMPROVE imputation in viral Lineage lineages Linkage disequilibrium pathogen Phylogeny Precision predict producing reference panel Result SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 pandemic SARS-CoV-2 sequencing sequence sequenced sequencing data Surveillance utility virus was tested whole-genome imputation whole-genome sequencing [DOI] 10.1093/gigascience/giab078 PMC 바로가기 [Article Type] Technical Note
Whole-genome sequencing of SARS-COV-2 showed wide spread of B.1.525 in February 2021 in LibyaSARS-COV-2의 전체 게놈 시퀀싱은 2021년 2월 리비아에서 B.1.525의 광범위한 확산을 보여주었습니다.Article Published on 2021-12-012022-09-11 Journal: The Libyan journal of medicine [Category] SARS, 변종, 치료기술, [키워드] Alpha amplification B.1.1.7 B.1.525 can not cause center characteristic circulating circulating variants collected Control COVID-19 Denmark diagnostic disease control Frequency Human identify International Laboratory Libya Mutation new variants. other variant other variants pandemic performed positive quantitative PCR Research RT-qPCR RT-qPCR assay RT-qPCR assays S gene SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2 variants Sequencing Spread suggested tested Transmissibility variant variants virus whole genome Whole genome sequencing whole-genome sequencing [DOI] 10.1080/19932820.2021.2001210 PMC 바로가기 [Article Type] Article