SARS-CoV-2 Genome Sequencing Methods Differ in Their Abilities To Detect Variants from Low-Viral-Load SamplesSARS-CoV-2 게놈 시퀀싱 방법은 바이러스 부하가 낮은 샘플에서 변이체를 감지하는 능력이 다릅니다.Virology Published on 2021-08-112022-09-10 Journal: Journal of Clinical Microbiology [Category] MERS, SARS, 변종, 치료기술, [키워드] Ability acute respiratory syndrome acute respiratory syndrome coronavirus adopted Affect Analysis Complete coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 detect evaluated Genome genomic Genomic surveillance Genomics highlighting Illumina Infection transmission location mutants phylogenetic analyses Phylogenetic analysis probe protocol public health respiratory Sample SARS-CoV-2 sensitivity sequence severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus 2 specificity specimen Spread Surveillance Variability variant variants variants of concern Viral viral escape Viral load whole-genome sequencing [DOI] 10.1128/JCM.01046-21 PMC 바로가기 [Article Type] Virology
Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya케냐 해안에서 SARS-CoV-2의 도입 및 확산 추적Article Published on 2021-08-102022-09-10 Journal: Nature Communications [Category] MERS, SARS, 변종, 치료기술, [키워드] accounted B.1 collected country early stage early stages Epidemic Epidemiology European Evidence evidence of Genomic surveillance independent individual initial International introduced Kenya Lineage lineage B.1 lineages Local phylogenetics Phylogenomics Phylogeny prevented Public health response SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes screened sequenced Spread the epidemic Transmission viral infection [DOI] 10.1038/s41467-021-25137-x PMC 바로가기 [Article Type] Article
SARS-CoV-2 genomic surveillance in Costa Rica: Evidence of a divergent population and an increased detection of a spike T1117I mutation코스타리카의 SARS-CoV-2 게놈 감시: 다양한 인구의 증거 및 스파이크 T1117I 돌연변이의 검출 증가Article Published on 2021-08-012022-09-11 Journal: Infection, genetics and evolution : journal of mol [Category] SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] accumulating Analysis analyzed B.1 B.1.1 Cell clade Costa Rica country Course COVID-19 COVID-19 case COVID-19 pandemic D614G distribution Effectiveness evidence of feature Frequency Genome Genome sequencing genomic Genomic surveillance Genomic variability GISAID GISAID reported sequence increase in Infection Latin America less Lineage lineages Local Mutation no difference no differences nucleotide oligomerization ORF8 pandemic Pangolin lineage predicted predominant Prevalence Protein regions reported responsible SARS-CoV-2 SARS-CoV-2 genomic surveillance SARS-CoV-2 pandemic SARS-CoV-2 sequences sequence sequences Sequencing severity single nucleotide Spike protein Surveillance the SARS-CoV-2 the Spike Transmissibility Vaccine variant variant calling analysis variants virus whole genome whole-genome [DOI] 10.1016/j.meegid.2021.104872 PMC 바로가기 [Article Type] Article
Assessment of basic reproduction number (R 0), spatial and temporal epidemiological determinants, and genetic characterization of SARS-CoV-2 in Bangladesh방글라데시 SARS-CoV-2의 기본 생식 수(R 0), 공간 및 시간 역학 결정인자 및 유전적 특성 평가Article Published on 2021-08-012022-09-11 Journal: Infection, genetics and evolution : journal of mol [Category] SARS, 변종, 치료기술, 치료법, [키워드] Analysis assessment B.1 B.1.1 basic reproduction number calculated Case fatality rate circulating clade Cluster continuous monitoring country COVID-19 cumulative D614G detect determinants distribution effective Effectiveness epidemiological evaluate exponential growth Fatality rate Genetic Genome genomic Genomic analysis Genomic surveillance highest incidence of COVID-19 Infection isolates Lineage Local molecular molecular characteristics Molecular epidemiology Mutation Non-synonymous NSP11 NSP2 Nsp9 nucleocapsid nucleocapsid protein P323L pandemic Pangolin lineage performed Phylogenetic Phylogenetic analysis prediction predominant projection Protein RdRP SARS-CoV-2 SARS-CoV-2 sequence SARS-CoV-2 sequences SARS-CoV-2 strain sequence spike Spread strain Strains subsequent Surveillance Transmission dynamics unique vaccination variants of SARS-CoV-2 variations virus was recorded were recorded [DOI] 10.1016/j.meegid.2021.104884 PMC 바로가기 [Article Type] Article
Changing composition of SARS-CoV-2 lineages and rise of Delta variant in EnglandResearch Paper Published on 2021-07-312022-10-31 Journal: EClinicalMedicine [Category] COVID-19, [키워드] Academy B.1.1.7 B.1.617.2 Cancer Research UK Changing college Community community transmission concern COVID-19 cross-sectional DeepMind Delta delta variant dominant dominant lineage dominant variant driven by effort England English Epidemiology Europe Factor finding foundation Fund funding Gate genomic Genomic surveillance Immune escape Immunity Infection information Interaction intrinsic Lineage London Medical Research Council Medical Science Medicine MRC Mutation NHS non-B.1.1.7 variant outcome PCR Prevalence public health Region SARS-CoV-2 SARS-CoV-2 lineage specificity Spread study period Surveillance the SARS-CoV-2 thought trajectory Transmissibility Trust understanding variant variants of concern variety VoC Waste water monitoring Wellcome Sanger Institute WHO [DOI] 10.1016/j.eclinm.2021.101064 PMC 바로가기 [Article Type] Research Paper
Evolution and Epidemic Spread of SARS-CoV-2 in Colombia: A Year into the PandemicArticle Published on 2021-07-302022-10-28 Journal: Vaccines [Category] COVID-19, [키워드] addition Analysis applied carried changes in circulating Cluster Colombia containment measures Course Critical cumulative current diagnostic Disease surveillance distribution effort Epidemic epidemic models Epidemiology evaluated Evolution of SARS-CoV-2 exhibited generate Genome genomes sequenced Genomic analysis Genomic surveillance geographical distribution Health highest identify implementation incidence incidence rate information Measures median pandemic Phylogenetic Polymorphisms predict reduce Region SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 variant Scientific community Spread the SARS-CoV-2 Transmissibility Transmission dynamics variant Year [DOI] 10.3390/vaccines9080837 PMC 바로가기 [Article Type] Article
Assignment of epidemiological lineages in an emerging pandemic using the pangolin toolResources Published on 2021-07-302022-10-28 Journal: Virus Evolution [Category] COVID-19, [키워드] Community epidemiological Epidemiology facilitated Genome genomic Genomic surveillance growth implementation information Lineage lineages magnitude pandemic phylogenetics provided researcher SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomic data sequence Software submitted the SARS-CoV-2 Transmission virus virus genome [DOI] 10.1093/ve/veab064 PMC 바로가기 [Article Type] Resources
Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany독일의 SARS-COV-2 계보 A.27의 상승과 하락Article Published on 2021-07-292022-09-10 Journal: Viruses [Category] SARS, 변종, [키워드] (Alpha) abundance accumulation addition Alpha Amino acid amino acid substitution amino acid substitutions B.1.1.7 B.1.617.2 Border D614G mutation database Delta epitope France Frequency Genome Genomic surveillance Germany glycoprotein Immune escape L18F L452R Laboratory Lineage majority molecular sequence data N-terminal N501Y NTD public health surveillance RBD Receptor binding domain Region SARS-CoV-2 SARS-CoV-2 variants sequence Sequencing spike glycoprotein suggested the SARS-CoV-2 the Spike Transmissibility viral genomes VOCs VOIs [DOI] 10.3390/v13081491 PMC 바로가기 [Article Type] Article
Molecular epidemiology of SARS-CoV-2 in Cyprus키프로스에서 SARS-COV-2의 분자 역학Research Article Published on 2021-07-212022-09-10 Journal: PLoS ONE [Category] SARS, 변종, 유전자 메커니즘, 진단, 치료기술, [키워드] Analysis assist B.1.1.7 circulating collected conducted confirmed case COVID-19 Cyprus death Epidemiology evaluate Evolution genetic diversity genomic Genomic surveillance highlight incidence Lineage majority Measures Molecular diagnosis Molecular epidemiology pandemic pathogen Phylogenetic analysis positive sample Prevalence Public health intervention SARS-CoV-2 SARS-CoV-2 lineage Sequencing specimen Spread successive wave successive waves Surveillance The B.1.1.7 three group three groups Transmission Travel variant Viral VOC-202012/01 was performed whole genome Whole genome sequencing [DOI] 10.1371/journal.pone.0248792 PMC 바로가기 [Article Type] Research Article
Multiplex SARS-CoV-2 Genotyping Reverse Transcriptase PCR for Population-Level Variant Screening and Epidemiologic Surveillance인구 수준 변이 스크리닝 및 역학 감시를 위한 다중 SARS-CoV-2 유전자형 역전사효소 PCRArticle Published on 2021-07-192022-09-11 Journal: Journal of Clinical Microbiology [Category] SARS, 변종, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 among others approach Area B.1.1.7 B.1.351 B.1.427 B.1.429 B.1.526 clinically concerning Concordance coronavirus COVID-19 detect E484K E484K mutation E484K mutations equipment facilitate failure rate Genomic surveillance Genotype genotyping Infection L452R Laboratory large cohort multiplex Mutation mutations N501Y N501Y mutation NAAT nonsynonymous nucleic acid nucleic acid amplification nucleic acid amplification test P.2 variants pandemic PCR phenotypic Prevalence public health qPCR resource reverse transcriptase reverse transcriptase PCR RT-qPCR San Francisco San Francisco Bay SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2-positive specimen screened Screening Sequencing severe acute respiratory syndrome Coronavirus specificity specimen Spike protein subset Support Surveillance unique variant viral spike protein whole-genome sequencing [DOI] 10.1128/JCM.00859-21 PMC 바로가기 [Article Type] Article