Genome sequencing – Page 2 – Communicable Diseases Research

Genome-wide association study of SARS-CoV-2 infection in Chinese population

중국 인구의 SARS-CoV-2 감염에 대한 게놈 차원의 연관성 연구

Article

Published on 2022-09-012022-09-11
Journal: European Journal of Clinical Microbiology & Infect
[Category] MERS, SARS, 변종, 진단,

Evolving strategy for an evolving virus: Development of real-time PCR assays for detecting all SARS-CoV-2 variants of concern

진화하는 바이러스에 대한 진화하는 전략: 우려되는 모든 SARS-CoV-2 변이체를 검출하기 위한 실시간 PCR 분석법 개발

Article

Published on 2022-09-012022-09-11
Journal: Journal of virological methods
[Category] COVID19(2023년), MERS, SARS, 변종, 진단, 치료기술, 치료제,

[키워드] Alpha Amino acid amino acid change amino acid changes approach B.1.1.7 Beta Canada characterized clinical sensitivity clinical specificity complementary COVID-19 Critical cross-reactivity Delta detect development discriminatory mutation E gene E484K FIVE Gamma Genome sequencing implementation K417N L452R less limit of detection Lineage molecular MONITOR N501Y Negative predictive value nucleotide omicron Omicron variants P681 Pathogens PCR PCR assays positive Positive predictive value positive predictive values positive sample predictive values reaction real-time PCR assay real-time reverse transcriptase real-time RT-PCR replacement respiratory respiratory pathogen responsible reverse transcriptase rRT-PCR SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genome sequencing SARS-CoV-2 variant SARS-CoV-2 variants sensitivity Single nucleotide polymorphism single nucleotide polymorphisms specificity Spike protein subset Surveillance target the SARS-CoV-2 Variability variant variants variants of concern variants of concern. VoC VOCs while wild-type Δ69-70
[DOI] 10.1016/j.jviromet.2022.114553 PMC 바로가기 [Article Type] Article

Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis

Research

Published on 2022-08-302022-10-05
Journal: Nature Communications
[Category] 변종,

Host genomics of SARS-CoV-2 infection

SARS-CoV-2 감염의 숙주 유전체학

Review

Published on 2022-08-012022-09-11
Journal: European Journal of Human Genetics
[Category] COVID19(2023년), SARS, 바이오마커, 변종, 신약개발, 유전자 메커니즘, 치료제,

[키워드] acute infection approach approaches association Asymptomatic causal variant complications COVID-19 COVID-19 pneumonia demographic disease disease severity downstream Exome explain exploration Factor fraction functional genetic determinant genetic determinants Genetic variant Genome sequencing Genome-wide association studies genomic study highlighting host-virus interactions Human human genetic variation immune function individuals International involved life-threatening locus management Mild outcome pandemic Pathogenesis pathway Pathways Pneumonia Region required SARS-CoV-2 SARS-CoV-2 infected individuals SARS-COV-2 infection SARS-CoV-2 pathogenesis severe cases shown therapeutic targets type I interferon type I interferon response Variability with COVID-19
[DOI] 10.1038/s41431-022-01136-4 PMC 바로가기 [Article Type] Review

Rapid syndromic testing for respiratory viral infections in children attending the emergency department during COVID-19 pandemic in Lille, France, 2021-2022

2021-2022년 프랑스 릴에서 COVID-19 전염병 동안 응급실에 다니는 어린이의 호흡기 바이러스 감염에 대한 신속한 증후군 검사

Article

Published on 2022-08-012022-09-11
Journal: Journal of Clinical Virology
[Category] COVID19(2023년), SARS, 변종, 치료기술,

[키워드] Alpha variant both groups children circulation collected COVID-19 pandemic Delta disease Emergency emergency department enterovirus France Genome sequencing hospital Human Human rhinovirus in both groups Infection intensive care intensive care unit majority median median age molecular MOST multiplex Mutation nasopharyngeal swabs non-specific omicron Omicron variant Omicron variants Other Other respiratory viruses outpatients Panel Patient PCR-based assay pediatric positive Prevalence prevalent ranged Rapid respiratory respiratory infection respiratory infections respiratory syncytial virus respiratory viral infection respiratory virus respiratory viruses rhinovirus Sample SARS-CoV-2 SARS-CoV-2 infected patient SARS-CoV-2 infected patients SARS-COV-2 infection SARS-CoV-2 positivity SARS-CoV-2 variant screened severe disease significant increase Symptoms Syndromic testing. treated variant variants viral infections viral respiratory infections was performed
[DOI] 10.1016/j.jcv.2022.105221 PMC 바로가기 [Article Type] Article

COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme

고충실도 CRISPR-Cas12 효소를 사용한 COVID-19 변이체 탐지

Article

Published on 2022-07-202022-09-11
Journal: Journal of Clinical Microbiology
[Category] COVID19(2023년), SARS, 변종, 치료기술, 치료제,

[키워드] Analysis Assay validation circulating variant clinical sample clinical samples Concordance COVID-19 COVID-19 patient COVID-19 patients CRISPR CRISPR-Cas12 detection DETECTR Diagnostic method enzyme Enzymes faster followed by Genome sequencing guide RNAs identify infection control isothermal amplification L452R Laboratory test Laboratory tests LAMP Loop-mediated isothermal amplification Mutation mutations N501Y nucleotide omicron Patient polymorphism public health real-time RT-PCR RNAs SARS Coronavirus SARS coronavirus 2 SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 variant SARS-CoV-2 variants Sequencing single nucleotide Single nucleotide polymorphism SNP Surveillance target the SARS-CoV-2 Treatment treatment of COVID-19 patients utility variant variants Viral mutations viral mutations. whole-genome sequencing
[DOI] 10.1128/jcm.00261-22 PMC 바로가기 [Article Type] Article

Clinical and phylogenetic influenza dynamics for the 2019-20 season in the global influenza hospital surveillance network (GIHSN) – Pilot study

Article

Published on 2022-07-012023-06-24
Journal: Journal of Clinical Virology
[Category] 신종인플루엔자,

[키워드] Epidemiology Genome sequencing Hospitalization Influenza virus surveillance.
[DOI] 10.1016/j.jcv.2022.105184 PMC 바로가기

Making waves: Wastewater surveillance of SARS-CoV-2 in an endemic future

파도 만들기: 풍토병의 미래에 SARS-CoV-2의 폐수 감시

Article

Published on 2022-07-012022-09-11
Journal: Water research
[Category] COVID19(2023년), SARS, 변종,

Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021

Article

Published on 2022-07-012022-11-16
Journal: Microbial Genomics
[Category] COVID19(2023년), SARS, 변종, 치료기술,

Description of a One-Year Succession of Variants of Interest and Concern of SARS-CoV-2 in Venezuela

베네수엘라에서 SARS-CoV-2에 대한 관심 및 우려의 변종에 대한 1년 연속 설명

Article

Published on 2022-06-242022-09-11
Journal: Viruses
[Category] COVID19(2023년), SARS, 변종, 치료기술,