Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Outbreak at a College With High Coronavirus Disease 2019 (COVID-19) Vaccination Coverage-Connecticut, August 2021-September 2021Article Published on 2022-10-032022-11-16 Journal: Clinical Infectious Diseases: An Official Publicat [Category] COVID19(2023년), SARS, 변종, [키워드] 95% CI 95% confidence interval activity acute respiratory syndrome adjusted odds ratio Analysis attack Attending Characteristics collected college Community Complete Connecticut coronavirus coronavirus 2 Coverage COVID-19 Delta delta variant demographics Department diagnosed Enrollment genomes higher education highest Infection information investigated laboratory-confirmed Logistic regression multivariate outbreak Phylogenetic relationship provided Public reduce respiratory SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 transmission student suggested uninfected vaccination Vaccine Vaccine breakthrough viral genome sequence [DOI] 10.1093/cid/ciac422 PMC 바로가기
Comparison of viral propagation and drug response among SARS-CoV-2 VOCs using replicons capable of recapitulating virion assembly and releaseArticle Published on 2022-10-012022-11-15 Journal: Virologica Sinica [Category] COVID19(2023년), SARS, 변종, 치료제, [키워드] acute respiratory syndrome assays Beta changed coronavirus Delta delta VoCs drug resistance drug response ENhance Evolution of SARS-CoV-2 genomes immune evasion inhibitor manifested Mutation novel antiviral drugs Protein provide quantification released remained Remdesivir replicon RNA S gene SARS-CoV-2 sgRNA supernatant Support Transcription variants variants of concern variants of concern (VOC) viral genome replication viral infectivity viral life cycle viral propagation Viral protein Viral-like particle (VLP). viral-like particles virion assembly VLP VoC VOCs WIV04 strain [DOI] 10.1016/j.virs.2022.06.008 PMC 바로가기
Potential intervariant and intravariant recombination of Delta and Omicron variantsDelta 및 Omicron 변이체의 잠재적인 intervariant 및 intravariant 재조합Article Published on 2022-10-012022-09-11 Journal: Journal of medical virology [Category] COVID19(2023년), SARS, 변종, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 coronavirus Delta Delta-Omicron XD disease-causing Evidence genomes new SARS-CoV-2 omicron pathogenic Potential raising Recombination SARS-CoV-2 SARS-CoV-2 genomes variant variants [DOI] 10.1002/jmv.27939 PMC 바로가기 [Article Type] Article
A GPU-accelerated compute framework for pathogen genomic variant identification to aid genomic epidemiology of infectious disease: a malaria case study전염병의 게놈 역학을 지원하기 위한 병원체 게놈 변이체 식별을 위한 GPU 가속 컴퓨팅 프레임워크: 말라리아 사례 연구Article Published on 2022-09-202022-11-16 Journal: Briefings in Bioinformatics [Category] 말라리아, 변종, 유전자 메커니즘, [키워드] accelerated Accuracy COVID-19 pandemic dataset demonstrated disease Diseases effort epidemiological Epidemiology genomes genomic genomic data GPU malaria pathogen pathogen genomics Plasmodium falciparum malaria reduced reproducibility sequence SNPs Surveillance transmission pattern variant Variant calling whole-genome sequencing [DOI] 10.1093/bib/bbac314 PMC 바로가기
Molecular detection of SARS-CoV-2 and differentiation of Omicron and Delta variant strainsArticle Published on 2022-09-012022-11-15 Journal: Transboundary and emerging diseases [Category] SARS, 변종, 치료기술, [키워드] aa deletion assay B.1.1.529 clinical sample coefficient Coverage COVID-19 Data analysis Delta delta variant detect Detection limit Diagnosis Efficiency genomes Genotype genotypes Human indicated majority molecular Mutation N-gene nasal swab omicron Omicron variant pandemic PCR PCR amplification PCR reaction positive predicted prevalent strain primer probe produced replacing RT-qPCR SAR-CoV-2 SARS-CoV-2 SARS-CoV-2 virus Sequencing Spread Standard standard curve strain Strains Subtypes TaqPath tested The United States Thermofisher variant were used wild-type [DOI] 10.1111/tbed.14497 PMC 바로가기
Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation SequencingArticle Published on 2022-08-312022-11-15 Journal: Microbiology Spectrum [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] Accuracy Amplicon amplified Beta caused clinical sample concern correlation COVID-19 Delta described develop died DNA sequence eight genomes genotyping GISAID identification include isolate Local manuscript Mutation mutations Next-generation sequencing NGS nine omicron one-step PCR pandemic patients PCR public health Rapid RNA RNA sample SARS-CoV-2 sequenced Seven Spearman Spike protein tested the SARS-CoV-2 the spike protein Treatment vaccination variant variants variants of concern variants of concern (VOC) variants of interest Variants of interest (VOI). virulent VoC VOCs was used website were used WGS Whole-genome sequence whole-genome sequencing Wuhan isolate [DOI] 10.1128/spectrum.00736-22 PMC 바로가기
SARS-CoV-2 Infections in Vaccinated and Unvaccinated Populations in Camp Lemonnier, Djibouti, from April 2020 to January 2022Article Published on 2022-08-302022-11-15 Journal: Viruses [Category] SARS, 변종, 치료기술, [키워드] acute respiratory syndrome Analysis analyzed Asia bioinformatics caused circulating circulating variant collected contribute coronavirus country described Djibouti Europe genome sequence genomes genomic sequencing Genomics global pandemic individual Infectious disease knowledge Lineage majority Mutation nare North America pathogen Population SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 sequence sequenced Sequencing spike mutations Surveillance Swab vaccine breakthrough infections viral sequence [DOI] 10.3390/v14091918 PMC 바로가기
Distinct evolutionary trajectories of SARS-CoV-2-interacting proteins in bats and primates identify important host determinants of COVID-19박쥐와 영장류에서 SARS-CoV-2 상호작용 단백질의 뚜렷한 진화 궤적은 COVID-19의 중요한 숙주 결정 요인을 식별합니다Article Published on 2022-08-302022-09-11 Journal: Proceedings of the National Academy of Sciences of [Category] SARS, 치료기술, 치료제, [키워드] ACE2 receptor acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 adaptation adaptive Analysis Arm arms race autophagy bat bats caused clinical trial comparative genetics coronavirus coronavirus disease COVID-19 COVID-19 severity detection determinant Epidemics functional FYCO1 Genes Genetic genetic determinant Genome genomes Host humans identify in vivo Inflammation Inflammatory involved loci mammalian occurred pandemic Pathogenesis performed Phosphorylation positive Positive selection primates primates and bats Protein Regulation Replication residue residues RIPK1 SARS-CoV SARS-CoV-2 SARS-CoV-2 and COVID-19 SARS-COV-2 infection SARS-CoV-2 susceptibility severe acute respiratory syndrome Coronavirus severe COVID-19 severity signature susceptibility targets TMPRSS2 trajectory Vaccines virus virus–host coevolution. [DOI] 10.1073/pnas.2206610119 PMC 바로가기 [Article Type] Article
Probable Animal-to-Human Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Delta Variant AY.127 Causing a Pet Shop-Related Coronavirus Disease 2019 (COVID-19) Outbreak in Hong Kong중증 급성 호흡기 증후군 코로나바이러스 2(SARS-CoV-2) 델타 변종 AY.127의 동물 간 전파 가능성이 있어 홍콩에서 애완동물 가게 관련 코로나바이러스 질병 2019(COVID-19) 발생Article Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, [키워드] 2 acute respiratory syndrome acute respiratory syndrome coronavirus Analysis anti-SARS-CoV-2 antibody causing Chain Reaction collected conducted Contact coronavirus coronavirus 2 coronavirus disease Coronavirus disease 2019 CoV COVID-19 COVID-19 outbreak Delta delta variant Delta variant AY.127 demonstrated direct contact dwarf enzyme enzyme immunoassay euthanized female Genome genomes Genomic analysis hamster hamsters Hong Kong Human husband immunoassay infect International investigation Laboratory mammals Mesocricetus nucleotide outbreak pandemic virus Patient patients performed pet Phodopus polymerase chain polymerase chain reaction positive Randomly reported respiratory reverse transcription reverse transcription polymerase chain reaction route RT-PCR SARS SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 RNA Sequencing analysis seropositive severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus 2 specimen Spread strain susceptible tested Transmission transmission of SARS-CoV-2 transmitted whole genome Whole genome sequencing [DOI] 10.1093/cid/ciac171 PMC 바로가기 [Article Type] Article
Variation in synonymous nucleotide composition among genomes of sarbecoviruses and consequences for the origin of COVID-19사베코바이러스 게놈 간 동의 염기 조성의 변이와 코로나19의 기원에 대한 영향Article Published on 2022-08-152022-09-11 Journal: Gene [Category] COVID19(2023년), SARS, 치료기술, [키워드] analysed bat bat virus Bulgaria China Codons consequence coronavirus COVID-19 COVID-19 pandemic cytosine degenerate diagnosed dinucleotides distribution eight Evidence evidence of explain feature FIVE Genome genomes group horseshoe bat Host host cell host cells include independent intermediate intermediate host Japan Kenya less Manis javanica mutations nucleotide pangolin pangolins RdRP RdRp selection Recombination reservoir Reservoir host responsible sarbecovirus Sarbecoviruses SARS epidemic SARS-CoV SARS-CoV-2 subgenus synonymous synonymous mutations the SARS epidemic uracil viral replication viruses [DOI] 10.1016/j.gene.2022.146641 PMC 바로가기 [Article Type] Article