Application of Host-Depleted Nanopore Metagenomic Sequencing in the Clinical Detection of Pathogens in Pigs and CatsArticle Published on 2023-12-132024-09-05 Journal: Animals : an Open Access Journal from MDPI [Category] update2024, [키워드] host gene removal metagenomic sequencing nanopore sequencing veterinary pathogenic microorganisms [DOI] 10.3390/ani13243838 PMC 바로가기 [Article Type] Article
A dual-process of targeted and unbiased Nanopore sequencing enables accurate and rapid diagnosis of lower respiratory infectionsArticle Published on 2023-11-042024-09-05 Journal: eBioMedicine [Category] update2024, [키워드] lower respiratory infections machine learning metagenomics nanopore sequencing Target amplification [DOI] 10.1016/j.ebiom.2023.104858 PMC 바로가기 [Article Type] Article
Metabarcoding of Hepatitis E Virus Genotype 3 and Norovirus GII from Wastewater Samples in England Using Nanopore Sequencingarticle Published on 2023-11-012024-09-05 Journal: Food and Environmental Virology [Category] update2024, [키워드] Environmental transmission hepatitis E virus metabarcoding nanopore sequencing Norovirus Wastewater-based epidemiology [DOI] 10.1007/s12560-023-09569-w PMC 바로가기 [Article Type] article
“Nano COVID-19”: Nanopore sequencing of spike gene to identify SARS-CoV-2 variants of concernHighlight Article Published on 2023-09-132024-09-05 Journal: Experimental Biology and Medicine [Category] update2024, [키워드] COVID-19 Nano COVID-19 nanopore sequencing SARS-CoV-2 spike gene Variant of concerns [DOI] 10.1177/15353702231190931 PMC 바로가기 [Article Type] Highlight Article
Viral and Bacterial Profiles in Endemic Influenza A Virus Infected Swine Herds Using Nanopore Metagenomic Sequencing on Tracheobronchial Swabsarticle Published on 2023-02-282024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] coinfections diagnostics domestic pigs influenza A virus nanopore sequencing [DOI] 10.1128/spectrum.00098-23 PMC 바로가기 [Article Type] article
SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencingArticle Published on 2022-10-182022-11-15 Journal: Virology Journal [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] A222V analysed approach ARTIC Network assist bioinformatics can be used circulating variant Cohort COVID-19 COVID-19 pandemic Delta delta variant distribution genomic Health include less mapped Mutation mutations nanopore sequencing National occurred omicron Patient positive primer Protein public health public health measures Q677H S protein SARS-CoV-2 SARS-CoV-2 genomes SARS-CoV-2 variant sequence Sequencing sequencing method spike Spike protein Surveillance Swedish the S protein the SARS-CoV-2 the Spike Uppsala County variant variants variants of concern variants of interest VoC whole-genome sequencing [DOI] 10.1186/s12985-022-01896-x PMC 바로가기
Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021Article Published on 2022-09-212022-11-16 Journal: Scientific Reports [Category] SARS, 변종, [키워드] acute respiratory syndrome collected concern coronavirus country COVID-19 Delta Delta VOC Epidemiology Europe European Genetic genomic highlight introduced less Local local public health nanopore sequencing Oxford pathogen Patient phylogeographic analysis public health SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 genomic surveillance scaled Sequencing sequencing technology Spread Support the epidemic Travel Ukraine variant VoC Volume [DOI] 10.1038/s41598-022-19414-y PMC 바로가기
Monkeypox virus genome sequence from an imported human case in ColombiaArticle Published on 2022-09-022023-06-09 Journal: Biomédica [Category] Fulltext, 원숭이두창, [키워드] Colombia Monkeypox virus nanopore sequencing Phylogeny [DOI] 10.7705/biomedica.6647 PMC 바로가기
Genomics of postvaccination SARS-CoV-2 infections during the Delta dominated second wave of COVID-19 pandemic, from Mumbai Metropolitan Region (MMR), India델타가 인도 뭄바이 대도시 지역(MMR)에서 발생한 COVID-19 대유행의 두 번째 물결을 지배하는 동안 백신 접종 후 SARS-CoV-2 감염의 게놈Article Published on 2022-09-012022-09-11 Journal: Journal of medical virology [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 치료법, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 analyzed association B.1.617.2 clade collected coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 COVID-19 pandemic COVID-19 patient Delta delta variant Delta+ demographics disease severity Epidemiology form genetics Genomics Home isolation hospital increase in India Infection initiated K417N Lineage lineages MMR Mumbai Mutation mutations nanopore sequencing nucleocapsid ORF1a Oxford Patient postvaccination predominant progressed proportion reduction in Region Sample SARS Coronavirus SARS-CoV-2 SARS-COV-2 infection second wave selected sequence sequenced sequences severe acute respiratory syndrome Coronavirus shown the disease vaccination Vaccination Status variant viral genome viral genomes virus virus classification Wave [DOI] 10.1002/jmv.27861 PMC 바로가기 [Article Type] Article
Neutralization of Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant by Sera From BNT162b2 or CoronaVac Vaccine RecipientsBNT162b2 또는 CoronaVac 백신 수혜자의 혈청에 의한 중증 급성 호흡기 증후군 코로나바이러스 2 오미크론 변이체의 중화Article Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, 진단, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Antibody titer Antibody titers Beta Beta variant beta variants BNT162b2 CoronaVac coronavirus coronavirus 2 coronavirus disease Coronavirus disease 2019 COVID-19 COVID-19 vaccine Delta variants detectable Effectiveness elicited evade genome sequence geometric geometric mean GISAID database GMT GMTs Health Organization isolate Lineage Live virus microneutralization Mutation Nanopore nanopore sequencing neutralization Neutralizing Neutralizing antibodies neutralizing antibody Neutralizing antibody titer no significant difference not affect of BNT162b2 omicron Omicron variant Patient recipient recipients respiratory risk Risk assessment SARS-CoV-2 Sequencing sera severe acute respiratory syndrome Coronavirus significant difference significantly lower spike mutation strain Strains susceptibility TMPRSS2 Vaccine Vaccines variant variant of concern VeroE6 cells virus was determined whole genome sequence World Health Organization [DOI] 10.1093/cid/ciab1041 PMC 바로가기 [Article Type] Article