Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing인구 구조 분석 및 핵심 유전체 다중 위치 서열 분석을 통한 시겔라의 실험실 모니터링Article Published on 2022-01-272024-07-30 Journal: Nature Communications [Category] 세균성이질, [키워드] Bacterial genomics Genome informatics Phylogenomics Policy and public health in microbiology [DOI] 10.1038/s41467-022-28121-1 PMC 바로가기 [Article Type] Article
Phylogenomics and population genomics of SARS-CoV-2 in Mexico during the pre-vaccination stage reveals variants of interest B.1.1.28.4 and B.1.1.222 or B.1.1.519 and the nucleocapsid mutation S194L associated with symptoms백신 접종 전 단계에서 멕시코에서 SARS-CoV-2의 계통유전체학 및 인구유전체학은 관심 변이 B.1.1.28.4 및 B.1.1.222 또는 B.1.1.519 및 증상과 관련된 뉴클레오캡시드 돌연변이 S194L을 나타냅니다Research Articles Published on 2021-11-302022-09-10 Journal: Microbial Genomics [Category] MERS, SARS, 변종, 치료기술, 치료법, [키워드] adaptive addition allelic Analysis Asymptomatic Asymptomatic carriers baseline carrier clades Clinical data complementary COVID-19 pandemic disease dual E484K Effect Evolution Evolution of SARS-CoV-2 fixed Follow-up Frequency Genetic Genome genomes help highlight Host lack Mexico mitigate Mutation N-terminal domain nucleocapsid nucleocapsid protein Nucleocapsid proteins nucleotide pandemic phenotypic Phylogenomics population genomics pre-vaccination Prevalence Protein quantitative PCR raising receptor-binding motif Region reveal SARS-CoV-2 SARS-CoV-2 virus Single nucleotide variant single nucleotide variants spike and nucleocapsid proteins spike glycoprotein Spike protein Symptom symptomatic and asymptomatic Symptomatic patients T478K the SARS-CoV-2 virus understanding vaccination variant variants variants of interest virus [DOI] 10.1099/mgen.0.000684 PMC 바로가기 [Article Type] Research Articles
A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clonesSARS-COV-2 Sublineages 및 종양 클론을 추론하는 환자 내 이종성을위한 일반적인 방법 론적 계통 발생 유전학 프레임 워크Research Published on 2021-11-162022-09-10 Journal: BMC Genomics [Category] MERS, SARS, 변종, 유전자 메커니즘, [키워드] Accuracy acquisition assumption Birth Cancer cancer patient capture clinically Clonal evolution clone clones co-infecting COVID-19 COVID-19 patient disease Evolution Frequency Genetic genetic material genomic genomic data genomic read genomic variant handle heterogeneity highlighting identify illness implication in viral Infection information methodological Mutation offer Phylogenetic Phylogenetic tree phylogenies Phylogenomics Phylogeny provide resistance mechanism resistance mechanisms Result SARS-CoV-2 SARS-CoV-2 virus supplementary material targets the mean the SARS-CoV-2 virus therapeutic therapy Treatment Tumor Tumor evolution undergo variant frequency Viral [DOI] 10.1186/s12864-021-07660-9 PMC 바로가기 [Article Type] Research
Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into PeruPhylogenomics는 SARS-CoV-2의 페루로의 여러 도입 및 조기 확산을 보여줍니다Article Published on 2021-10-012022-09-11 Journal: Journal of medical virology [Category] SARS, 유전자 메커니즘, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 addition Analysis analyzed Asia caused circulating Cluster coronavirus coronavirus disease Coronavirus disease 2019 country COVID-19 COVID-19 pandemic Europe event Evidence Evolution Genetic genomic highest independent Lineage molecular Molecular epidemiology mortality rate pandemic Patient Phylogenomics Region related virus related viruses reveal SARS-CoV-2 SARS-CoV-2 isolate SARS-CoV-2 isolates severe acute respiratory syndrome Coronavirus Spread suggested Transmission transmission of SARS-CoV-2 viral genomes virus whole-genome sequencing [DOI] 10.1002/jmv.27167 PMC 바로가기 [Article Type] Article
Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity르완다에서 SARS-CoV-2의 게놈 시퀀싱은 혈통 다양성에서 들어오는 여행자의 중요성을 보여줍니다Article Published on 2021-09-292022-09-10 Journal: Nature Communications [Category] SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] A.23.1 airport analyzed B.1.1.7 B.1.351 B.1.351 variant circulating combating country COVID-19 COVID-19 transmission distribution Epidemiology Genetics research genomic genomic sequence Genomic surveillance highlight identify Infection International airport Lineage Local Metadata Phylogenomics Public health interventions reveal SARS-CoV-2 sequence Sequencing shift strain Strains Surveillance tested Transmission Transmission dynamics transmission rates Travel variant Viral whole genome sequence [DOI] 10.1038/s41467-021-25985-7 PMC 바로가기 [Article Type] Article
Healthcare workers acquired COVID-19 disease from patients? An investigation by phylogenomicsShort communication Published on 2021-09-012022-10-05 Journal: The Journal of hospital infection [Category] SARS, 변종, [키워드] Community Contact tracing coronavirus disease COVID-19 COVID-19 disease COVID-19 outbreak determine Epidemic epidemiological Epidemiology HCW HCWs healthcare healthcare worker Healthcare workers hospital nine nosocomial occurred Occurrence Patient Phylogenetic Phylogenomics prevalence of COVID-19 SARS-CoV-2 Support Transmission whole-genome sequencing [DOI] 10.1016/j.jhin.2021.05.017 [Article Type] Short communication
Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya케냐 해안에서 SARS-CoV-2의 도입 및 확산 추적Article Published on 2021-08-102022-09-10 Journal: Nature Communications [Category] MERS, SARS, 변종, 치료기술, [키워드] accounted B.1 collected country early stage early stages Epidemic Epidemiology European Evidence evidence of Genomic surveillance independent individual initial International introduced Kenya Lineage lineage B.1 lineages Local phylogenetics Phylogenomics Phylogeny prevented Public health response SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes screened sequenced Spread the epidemic Transmission viral infection [DOI] 10.1038/s41467-021-25137-x PMC 바로가기 [Article Type] Article
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nationsResearch Article Published on 2021-06-082022-10-28 Journal: Virus Evolution [Category] COVID-19, [키워드] acute respiratory syndrome assist Australia characterising Contact tracing coronavirus country COVID-19 declined defined demonstrated disease early stage Effect effective epidemiological history Epidemiology First wave Genome genomic data Health human movement Iceland International introduced Ministry of Health New New Zealand pandemic phylodynamic Phylogenomics reduction Reproduction number reveal robust spread of COVID-19 subsampling Surveillance Taiwan transmission cluster Travel viral epidemics [DOI] 10.1093/ve/veab052 PMC 바로가기 [Article Type] Research Article
Novel Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV2) and Other Coronaviruses: A Genome-wide Comparative Annotation and AnalysisComparative Study Published on 2021-05-012022-10-04 Journal: Molecular and cellular biochemistry [Category] SARS, 신약개발, [키워드] alleviate Analysis analyzed annotation cause Comparative coronavirus coronavirus 2 COVID-19 death develop diagnostic difficulty in breathing disease dry cough eight facilitate Factors Fatality rate Fever Genome genome map genomes genomic geographical location Host Human identify IFR include infecting Infection involved less MERS Middle East Mild Mutation mutational rate novel Other other coronavirus outbreak pandemic peptide Phylogenetic analysis Phylogenomics polymorphism predicted rate of infection researcher respiratory SARS-CoV SARS-CoV2 sequenced severe cases severe respiratory illness similarity SNP SNPs SSR Symptom transcriptional UTR UTR. virus virus infection WHO whole genome World Health Organization Wuhan [DOI] 10.1007/s11010-020-04027-8 PMC 바로가기 [Article Type] Comparative Study
Limited Genetic Diversity Detected in Middle East Respiratory Syndrome-Related Coronavirus Variants Circulating in Dromedary Camels in JordanCommunication Published on 2021-03-312022-10-28 Journal: Viruses [Category] Coronavirus, Fulltext, [키워드] amplify Arabian Peninsula Camel circulating circulation coronavirus Coronaviruses Diversity Dromedary Endemic genetic diversity Genome sequence data greater Human Jordan Kingdom lack Limited Lineage MERS MERS-CoV MERS-CoV genome Middle East nasal swab nosocomial outbreak pathogen Phylogenomics population genomics Recombination reported respiratory resulting Saudi Arabia sensitivity sequence South Korea subsequent analysis TCID Transmission United Arab Emirate variant viral genomics zoonoses zoonotic [DOI] 10.3390/v13040592 PMC 바로가기 [Article Type] Communication