Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detectionArticle Published on 2022-10-052022-11-15 Journal: Frontiers in Public Health [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] approach Cluster Clustering delta variant detect Epidemiology Genetic genomic Genomic surveillance Guiding incidence index case Infection less measure MONITOR New new virus outbreak outbreak detection Outbreaks pathogen pathogen genomics proportion public health public health. recommendation reduced resources SARS-CoV-2 SARS-CoV-2 genomic surveillance sequence sequenced Sequencing similarity South Surveillance the SARS-CoV-2 variants whole genome [DOI] 10.3389/fpubh.2022.1004201 PMC 바로가기
Detecting SARS-CoV-2 variants in wastewater and their correlation with circulating variants in the communitiesArticle Published on 2022-09-272022-11-15 Journal: Scientific Reports [Category] SARS, 변종, 치료기술, [키워드] absence circulating circulating variant collected Community complementary coronavirus correlation detection determine facility feasible genomic RNA individual infected individual Meadow number of infected prevalence of COVID-19 recent Reclamation resulting SARS-CoV-2 variant SARS-CoV-2 variants SARS-CoV-2 viral load sequenced specimen swabs Transmissibility variant wastewater water [DOI] 10.1038/s41598-022-20219-2 PMC 바로가기
First reported nosocomial SARS-CoV-2 outbreak in a hospital-based laundry facility병원 기반 세탁 시설에서 처음 보고된 병원 SARS-CoV-2 발생Original Paper Published on 2022-09-152022-09-11 Journal: Epidemiology and Infection [Category] SARS, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus addition assumed Cluster Contamination coronavirus COVID-19 defined detect Drinking Epidemiological investigation Genetic handling Health care Health care worker health care workers help identify index case index cases Infection laundromat facility less molecular Next-generation sequencing nosocomial observation observations outbreak PCR tests Phylogenetic analysis PPE qRT-PCR Questionnaires reported respiratory SARS-CoV-2 SARS-CoV-2 transmission screened sequenced swabs Transmission Viral Viral RNA was performed [DOI] 10.1017/S0950268821002016 PMC 바로가기 [Article Type] Original Paper
SARS-CoV-2 variant trends in Ireland: Wastewater-based epidemiology and clinical surveillance아일랜드의 SARS-CoV-2 변종 경향: 폐수 기반 역학 및 임상 감시Article Published on 2022-09-102022-09-11 Journal: The Science of the total environment [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] Alpha Alpha variant average circulating circulating variant circulating variants clinical clinical sample clinical samples collected Community complement conducted confirmed case confirmed cases correlated COVID-19 case COVID-19 disease Delta delta variant demonstrated determine Digital digital PCR disease Effectiveness Epidemiology Genome Genomic surveillance greater highlight identify Infection Ireland MONITOR National notification offer Prevalence prevalence of COVID-19 quantification RNA RNA concentration SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 infections SARS-CoV-2 lineage SARS-CoV-2 N1 SARS-CoV-2 variant sequence sequenced Sequencing significantly Spread Surveillance Validity variant variants variants of concern Viral RNA VOCs wastewater Wastewater surveillance. [DOI] 10.1016/j.scitotenv.2022.155828 PMC 바로가기 [Article Type] Article
Tracing the trajectories of SARS-CoV-2 variants of concern between December 2020 and September 2021 in the Canary Islands (Spain)Article Published on 2022-09-092022-11-16 Journal: Frontiers in Cellular and Infection Microbiology [Category] SARS, 변종, [키워드] acute respiratory syndrome B.1.1.7 B.1.351 B.1.617.2 Beta Canary Canary Island Canary Islands collected coronavirus COVID-19 Delta dissect distribution effort epidemic wave Europe explain Gamma genomic Genomic surveillance helping heterogeneous Outbreaks pandemic public health respiratory sample responsible SARS-CoV-2 SARS-CoV-2 variant sequenced Spain Spread Surveillance the SARS-CoV-2 tracing trajectory variants of concern variants of concern tracking. viral genome VoC VOCs [DOI] 10.3389/fcimb.2022.919346 PMC 바로가기
Genomic surveillance of SARS-CoV-2 Omicron variants on a university campusArticle Published on 2022-09-062022-11-15 Journal: Nature Communications [Category] SARS, 변종, 유전자 메커니즘, 진단, [키워드] conducted Cycle threshold value Delta delta variant demonstrated Genome genomic Genomic surveillance greater individual Mask mandates Measures median novel omicron pandemic positive predominant Public health responses reproductive SARS-CoV-2 sequenced Sequencing surveillance data symptomatic infection tested the SARS-CoV-2 university vaccination variant viral strain whole genome [DOI] 10.1038/s41467-022-32786-z PMC 바로가기
Automated Library Construction and Analysis for High-Throughput Nanopore Sequencing of SARS-CoV-2Article Published on 2022-09-012022-11-16 Journal: The journal of applied laboratory medicine [Category] SARS, 변종, [키워드] 96-well plate addition Amplicon Analysis analyzed ARTIC protocol automated clade construction correlation Coverage demonstrated Dilution fraction implementation IMPROVE Laboratory library median Mutation Oxford PCR Plate prevalent processed purified RNA Quality control quality score reduced Region reliability required rising robust SARS-CoV-2 SARS-CoV-2 sequencing sequence sequenced Sequencing strain Support threshold unique variant variants of concern [DOI] 10.1093/jalm/jfac054 PMC 바로가기
Genomic surveillance of SARS-COV-2 reveals diverse circulating variant lineages in Nairobi and Kiambu Counties, KenyaArticle Published on 2022-09-012022-11-15 Journal: BMC Genomics [Category] SARS, 변종, 유전자 메커니즘, 치료기술, 치료제, [키워드] A.23.1 analysis approaches B.1 B.1.1 B.1.1.7 B.1.617.2 China circulating COVID-19 outbreak Europe events exhibiting genetic diversity genetic isolate genomic Genomic surveillance Genomics infection control infections Kenya Lineage lineages Mutation pandemic Phylogeny populations predominant provide quality check Region regions reveal Sample SARS-CoV-2 SARS-CoV-2 epidemiology SARS-CoV-2 isolate sequenced South Africa Surveillance United Kingdom USA Vaccine variant Variant. [DOI] 10.1186/s12864-022-08853-6 PMC 바로가기
SARS-CoV-2 genomic surveillance as an evidence-based infection control approach in an offshore petroleum employee population근해 석유 직원 인구에서 증거 기반 감염 통제 접근 방식으로서의 SARS-CoV-2 게놈 감시Article Published on 2022-09-012022-09-11 Journal: American journal of infection control [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] Analysis approach can be used Cluster concerning contributed COVID-19 Efficacy epidemiological data Epidemiology evaluate genomic genomic data Genomic surveillance Gulf Gulf of Mexico Industrial Industrial hygiene Industrial hygienist infecting Infection infection control information International involved limit outbreak Outbreaks over PCR Phylogenetic analysis platform Population Positive test protocol quarantine reported SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 genomic surveillance sequenced serology Spread suggested Support Surveillance Symptom tested testing protocols transmissions variant viral strain Viral transmission was used WHO Whole genome sequencing whole genome sequencing. [DOI] 10.1016/j.ajic.2022.05.008 PMC 바로가기 [Article Type] Article
Genomics of postvaccination SARS-CoV-2 infections during the Delta dominated second wave of COVID-19 pandemic, from Mumbai Metropolitan Region (MMR), India델타가 인도 뭄바이 대도시 지역(MMR)에서 발생한 COVID-19 대유행의 두 번째 물결을 지배하는 동안 백신 접종 후 SARS-CoV-2 감염의 게놈Article Published on 2022-09-012022-09-11 Journal: Journal of medical virology [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 치료법, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 analyzed association B.1.617.2 clade collected coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 COVID-19 pandemic COVID-19 patient Delta delta variant Delta+ demographics disease severity Epidemiology form genetics Genomics Home isolation hospital increase in India Infection initiated K417N Lineage lineages MMR Mumbai Mutation mutations nanopore sequencing nucleocapsid ORF1a Oxford Patient postvaccination predominant progressed proportion reduction in Region Sample SARS Coronavirus SARS-CoV-2 SARS-COV-2 infection second wave selected sequence sequenced sequences severe acute respiratory syndrome Coronavirus shown the disease vaccination Vaccination Status variant viral genome viral genomes virus virus classification virus classification. Wave [DOI] 10.1002/jmv.27861 PMC 바로가기 [Article Type] Article