VirulenceFinder for Enterococcus faecium and Enterococcus lactis : an enhanced database for detection of putative virulence markers by using whole-genome sequencing dataMethods and Protocols Published on 2024-03-082024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] PVM virulence web tool WGS [DOI] 10.1128/spectrum.03724-23 PMC 바로가기 [Article Type] Methods and Protocols
Live tracking of a plant pathogen outbreak reveals rapid and successive, multidecade plasmid reductionResearch Article Published on 2024-02-262024-09-05 Journal: mSystems [Category] update2024, [키워드] genome structure Plasmid WGS Xanthomonas hortorum [DOI] 10.1128/msystems.00795-23 PMC 바로가기 [Article Type] Research Article
Increase in invasive group A streptococcal infections in Milan, Italy: a genomic and clinical characterizationMicrobiology Original Research Published on 2024-01-112024-09-05 Journal: Frontiers in Microbiology [Category] update2024, [키워드] GAS Genomic surveillance necrotizing fasciitis Streptococcus pyogenes virulence factors WGS [DOI] 10.3389/fmicb.2023.1287522 PMC 바로가기 [Article Type] Microbiology Original Research
Targeted amplification-based whole genome sequencing of Monkeypox virus in clinical specimensMethods and Protocols Published on 2024-01-042024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] Monkeypox virus mpox targeted amplification WGS [DOI] 10.1128/spectrum.02979-23 PMC 바로가기 [Article Type] Methods and Protocols
Comparison of next generation technologies and bioinformatics pipelines for capsular typing of Streptococcus pneumoniae폐렴구균의 캡슐형 분류를 위한 차세대 기술과 생물정보학 파이프라인 비교Article Published on 2023-12-192024-08-24 Journal: Journal of Clinical Microbiology [Category] 폐렴구균 감염증, [키워드] in silico serotyping ONT Pathogenwatch pneumococci validation WGS
Genetic Profiling of Plasmodium ovale wallikeri Relapses With Microsatellite Markers and Whole-Genome SequencingArticle Published on 2023-10-182024-08-29 Journal: Nanoscale [Category] 말라리아, [키워드] Microsatellites Plasmodium ovale wallikeri relapses sWGA. WGS
Surveillance of SARS-CoV-2 infection based on self-administered swabs, Denmark, May to July 2022: evaluation of a pilot studyarticle Published on 2023-09-212024-09-05 Journal: Eurosurveillance [Category] update2024, [키워드] COVID-19 Home-based testing system monitoring PCR Self-swab Self-test Surveillance WGS [DOI] 10.2807/1560-7917.ES.2023.28.38.2200907 PMC 바로가기 [Article Type] article
First cases of SARS-CoV-2 BA.2.86 in Denmark, 2023article Published on 2023-09-072024-09-05 Journal: Eurosurveillance [Category] update2024, [키워드] COVID-19 diagnostic preparedness emerging variant epidemiological preparedness SARS-CoV-2 Sequencing virus wastewater surveillance WGS [DOI] 10.2807/1560-7917.ES.2023.28.36.2300460 PMC 바로가기 [Article Type] article
Etiological Survey and Traceability Analysis of a Foodborne Disease Outbreak of Salmonella Senftenberg in Guizhou Provincearticle Published on 2023-08-312024-09-01 Journal: Foodborne Pathogens and Disease [Category] 살모넬라증, [키워드] Foodborne disease PFGE Salmonella Senftenberg wgMLST WGS [Article Type] article
Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involvedarticle Published on 2023-07-242024-09-05 Journal: Genome Medicine [Category] update2024, [키워드] Co-infections SARS-CoV-2 segregation WGS [DOI] 10.1186/s13073-023-01198-z PMC 바로가기 [Article Type] article