Transmission of SARS-CoV-2 in northern Ghana: insights from whole-genome sequencing북부 가나에서 SARS-CoV-2의 전파: 전체 게놈 시퀀싱의 통찰력Multicenter Study Published on 2021-05-012022-09-11 Journal: Archives of Virology [Category] SARS, 진단, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 analysed analyzed B.1 boost build characterized circulation clade clades Clustering Complete composed Concentration coronavirus Coverage COVID-19 distance excess genome sequence Genome sequences imported case lineages majority nine Patient performed phylogenetically Region respiratory RNA SARS-CoV-2 sequence sequences Sequencing severe acute respiratory syndrome Coronavirus sub-Saharan Africa Transport transported Viral Viral RNA virus viruses was collected whole-genome sequencing [DOI] 10.1007/s00705-021-04986-3 PMC 바로가기 [Article Type] Multicenter Study
Rapid Spread of the SARS-CoV-2 Variant of Concern 202012/01 in Southern Italy (December 2020–March 2021)남부 이탈리아에서 SARS-CoV-2 우려 변종 202012/01의 급속한 확산(2020년 12월–2021년 3월)Article Published on 2021-04-292022-09-10 Journal: International Journal of Environmental Research an [Category] MERS, SARS, 변종, 치료기술, 치료제, [키워드] Apulia B.1.1.7 Clinical characteristics closure concern COVID-19 demographic and clinical characteristics Europe evaluate General population group Hospitalization implementation Intervention Italy Local lockdowns NPI NPIs positive sample proportion Rapid robust S gene S gene target failure SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2 variants School Schools Spread statistical analysis strain Strengthened study period subset Surveillance symptomatic the SARS-CoV-2 Vaccine variants of concern virological study VoC VOC 202012/01 VOC 202012/01-B.1.1.7 lineage SARS-CoV-2 VOCs was performed WGS whole-genome sequencing [DOI] 10.3390/ijerph18094766 PMC 바로가기 [Article Type] Article
How Genetics Might Explain the Unusual Link Between Malaria and COVID-19Medicine Published on 2021-04-262022-10-31 Journal: Frontiers in Medicine [Category] COVID-19, [키워드] ACE2 ACE2 receptor acute respiratory syndrome allele frequency coronavirus coronavirus disease correlations COVID-19 COVID-19 case COVID-19 cases demonstrated Epidemiology Evidence experiment Frequency Genes genetic information genetic variants Genomics help highest Hypothesis incidence increase Italy lowest malaria molecular mechanism pandemic Population positive Prevent reported SARS-COV-2 infection selected severity significantly subject subset therapeutic options variant WGS whole-genome sequencing whole-genome sequencing analysis [DOI] 10.3389/fmed.2021.650231 PMC 바로가기 [Article Type] Medicine
Reassortment and Persistence of Influenza A Viruses from Diverse Geographic Origins within Australian Wild Birds: Evidence from a Small, Isolated Population of Ruddy TurnstonesArticle Published on 2021-04-122023-06-22 Journal: Journal of Virology [Category] 조류인플루엔자, [키워드] Avian influenza virus Charadriiformes East Asian-Australasian flyway reassortant viruses shorebirds whole-genome sequencing wild bird surveillance. [DOI] 10.1128/JVI.02193-20 PMC 바로가기
Transmission of SARS-CoV-2 among healthcare workers and patients in a teaching hospital in the Netherlands confirmed by whole-genome sequencing전체 게놈 시퀀싱으로 확인된 네덜란드의 한 교육 병원의 의료 종사자와 환자 간의 SARS-CoV-2 전파Article Published on 2021-04-012022-09-11 Journal: The Journal of hospital infection [Category] SARS, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus-2 addition Admission Cluster Contact coronavirus disease Coronavirus disease 2019 Coronavirus-2 COVID-19 COVID-19 cohort diagnosed with COVID-19 early stage early stages epidemiological Evidence finding HCW HCWs healthcare worker Healthcare workers hospital Hospitalized Infection Isolation Molecular typing Netherland Netherlands nine outbreak pandemic Patient patients physical distancing positive SARS-CoV-2 sequence Seven Severe acute respiratory syndrome severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus-2 Transmission were infected WGS WGS. whole-genome sequences whole-genome sequencing [DOI] 10.1016/j.jhin.2021.02.005 PMC 바로가기 [Article Type] Article
Genomic surveillance of SARS-CoV-2 in the Republic of Congo콩고공화국에서 SARS-CoV-2의 게놈 감시Article Published on 2021-04-012022-09-11 Journal: International Journal of Infectious Diseases [Category] SARS, 변종, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 African assigned carried clade Clusters collected contributing to coronavirus Ct values D614G database Genome genomes Genomic surveillance Illumina individual information Lineage Lineage B1 Mutation Next-generation sequencing NGS pangolin provide Republic of Congo RT-PCR SARS CoV SARS CoV-2 SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 lineage SARS-CoV-2 sequence SARS-CoV-2 variants screened sequenced severe acute respiratory syndrome Coronavirus shown spike mutation submitted Surveillance Transmission virus WGS Whole genome sequencing whole-genome sequencing [DOI] 10.1016/j.ijid.2021.03.036 PMC 바로가기 [Article Type] Article
Comparison of conventional molecular and whole-genome sequencing methods for subtyping Salmonella enterica serovar Enteritidis strains from Tunisiaarticle Published on 2021-03-312024-09-01 Journal: European Journal of Clinical Microbiology & Infectious Diseases [Category] 살모넬라증, [키워드] Diversity genetic Multiple locus variable-number tandem repeat analysis Pulsed-field gel electrophoresis Salmonella enterica serovar Enteritidis single-nucleotide polymorphism whole-genome sequencing [Article Type] article
Detection of SARS-CoV-2 lineage P.1 in patients from a region with exponentially increasing hospitalisation rate, February 2021, Rio Grande do Sul, Southern Brazil입원율이 기하급수적으로 증가하는 지역의 환자에서 SARS-CoV-2 계통 P.1 검출, 2021년 2월, 브라질 남부 Rio Grande do SulRapid Communication Published on 2021-03-252022-09-10 Journal: Eurosurveillance [Category] SARS, 치료기술, [키워드] association Brazil COVID-19 detection finding hospital hospitalisation hospitalisations Increases Lineage North P.1 P.1 lineage Patient raise Rio Grande SARS-CoV-2 SARS-CoV-2 lineage severe COVID-19 South specimen subset whole-genome sequencing [DOI] 10.2807/1560-7917.ES.2021.26.12.2100276 PMC 바로가기 [Article Type] Rapid Communication
Whole-genome sequencing of SARS-CoV-2 reveals the detection of G614 variant in PakistanSARS-CoV-2의 전체 게놈 시퀀싱은 파키스탄에서 G614 변이체의 검출을 보여줍니다Research Article Published on 2021-03-232022-08-13 Journal: PLoS ONE [Category] SARS, 유전자 메커니즘, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Amino acid Analysis aspartic acid characteristic China clade coronavirus D614G D614G mutation Diego Evolution FIVE G614 variant genetic diversity Genome Genome sequences genomic GISAID glycine highlight Illumina Inc. India lead library Missense Mutation mutations NCBI Oman oropharyngeal swab oropharyngeal swabs pandemic Patient Phylogenetic analysis positive PrEP prevalent real-time RT-PCR Region respiratory reveal RNA SARS-CoV-2 SARS-CoV-2 strain selected sequence sequences Sequencing severe acute respiratory syndrome Coronavirus shown Slovakia Spike protein Spread strain Strains submitted United States virus Virus evolution viruses was performed whole genome Whole genome sequencing whole-genome whole-genome sequencing [DOI] 10.1371/journal.pone.0248371 PMC 바로가기 [Article Type] Research Article
SARS-CoV-2 outbreak in a tri-national urban area is dominated by a B.1 lineage variant linked to a mass gathering event3개국 도시 지역에서 발생한 SARS-CoV-2 발병은 대규모 모임 이벤트와 연결된 B.1 계보 변종에 의해 지배됩니다.Research Article Published on 2021-03-192022-08-13 Journal: PLoS Pathogens [Category] SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] analysed Attendance B.1 B.1 lineage B.1-C15324T B.1.1 Basel city clade classical Community concert connection Contact tracing COVGAP COVID-19 COVID-19 outbreak COVID-19 Pipeline defined disease-causing dissemination early phase epidemiological epidemiological data epidemiological link epidemiological links Epidemiology European event events Evidence Evolution facilitate family France genetic diversity Genome globe highlight identify initial International Interpretation Lineage lineage B.1 lineages Local mass naso-oropharyngeal swab Naso-oropharyngeal swabs oropharyngeal swabs outbreak Outbreaks pandemic Patient patient questionnaire performed Phylogenetic phylogenetic analyses Phylogenetic analysis Phylogenetic tree Phylogeny Positive test predominant Public health interventions question Questionnaires Region reported root routes of transmission SARS-CoV-2 SARS-CoV-2 genome sequence sequenced SNP C15324T Spread study period Switzerland taxonomic lineages the disease Transmission transmissions Travel Trial registration unique University Hospital Basel variant variants Viral viral genome viral genomes viral variant virus Virus evolution virus–SARS-CoV-2 was used Whole-genome sequence whole-genome sequences whole-genome sequencing Wuhan Wuhan, China [DOI] 10.1371/journal.ppat.1009374 PMC 바로가기 [Article Type] Research Article