metagenomic sequencing – Page 3 – Communicable Diseases Research

Dysbiosis of Oral and Gut Microbiomes in SARS-CoV-2 Infected Patients in Bangladesh: Elucidating the Role of Opportunistic Gut Microbes

Medicine

Published on 2022-02-142022-10-31
Journal: Frontiers in Medicine [Category] COVID-19,

[키워드] Analysis Bacteria Bacterial Bacteroide Bangladesh breathing difficulty caused clinical condition clinical outcomes clinical sample collected consortia contribute controls COVID-19 diabetes diagnostics diarrhea Dysbiosis Escherichia Gut healthy healthy control healthy controls hospitalized patient implication Infectious disease Interaction mapped metabolic pathways metagenomic sequencing metagenomics microbe microbial microbial community Microbiome oral oral and gut microbiome oral microbiota paired-end read pandemic disease patients with COVID-19 Prevotella reduced reduction in role SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 virus severity Shigella significantly significantly lower sore throat Streptococcus susceptibility the patient unique with COVID-19
[DOI] 10.3389/fmed.2022.821777 PMC 바로가기 [Article Type] Medicine

The Human Virome: Viral Metagenomics, Relations with Human Diseases, and Therapeutic Applications

Review

Published on 2022-01-282022-10-28
Journal: Viruses [Category] COVID-19,

Preexisting antibodies targeting SARS-CoV-2 S2 cross-react with commensal gut bacteria and impact COVID-19 vaccine induced immunity

Article

Published on 2022-01-012022-11-15
Journal: Gut Microbes [Category] SARS, 진단,

[키워드] anti-SARS-CoV-2 antibodies antibody Antibody titer Bacteria binding collected commensal gut bacteria correlated COVID-19 vaccine cross-react cross-reactive cross-reactive antibody demonstrated DNA vaccine domain dominant dose E. coli Efficacy epitope fecal Gut gut bacteria gut microbiota healthy Host Hsp60 Hsp70 Immunity immunized Impact inactivated LC-MS metagenomic sequencing mice microbial monoclonal antibodies monoclonal antibody mounted naïve P144 Protein RBD binding reactive S protein SARS-CoV-2 SARS-CoV-2 S SARS-CoV-2 S2 SARS-CoV-2 vaccination SPF Spike protein Vaccine vaccine immunogenicity variety
[DOI] 10.1080/19490976.2022.2117503 PMC 바로가기

Intraocular Viral Communities Associated With Post-fever Retinitis

Original Research

Published on 2021-11-192024-09-02
Journal: Frontiers in Medicine [Category] 대상포진,

[키워드] changes in virome human viruses metagenomic sequencing ocular pathogen post-fever retinitis vitreous fluid
[DOI] 10.3389/fmed.2021.724195 PMC 바로가기 [Article Type] Original Research

Nanopore metagenomic sequencing for detection and characterization of SARS-CoV-2 in clinical samples

임상 샘플에서 SARS-COV-2의 검출 및 특성화를위한 나노 포어 메타 게놈 시퀀싱

Research Article

Published on 2021-11-182022-09-10
Journal: PLoS ONE [Category] MERS, SARS, 변종, 치료기술, 치료제,

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

COVID-19 입원 환자의 뇌척수액에서 SARS-CoV-2 핵산이 없을 때 척수강내 염증 반응

Article

Published on 2021-11-152022-09-11
Journal: Journal of the neurological sciences [Category] SARS, 변종, 치료기술,

[키워드] absence acute COVID-19 albumin associations Atypical Blood Blood brain barrier cell count cerebrospinal fluid chemokine chemokines consecutive patient Control correlated COVID-19 COVID-19 patient COVID-19 patients Cryptococcus neoformans CSF Cytokines detectable evidence of healthy control HIV HIV-1 hospitalized patient IL-15 IL-6 IL-8 Infection Inflammation Inflammatory cytokine Inflammatory cytokines Inflammatory response inhibitory Intrathecal marker MCP-1 metagenomic sequencing MIP-1β monocyte Neurological symptom Neurological symptoms NEUROLOGY neurotropic pathogen Pathogens Patient patients patients with COVID-19 performed pleocytosis profile proinflammatory Proinflammatory cytokine proinflammatory cytokines Protein Quantitative reverse transcription PCR RT-qPCR SARS-CoV-2 nucleic acid SARS-CoV-2 RNA Sequencing subset suppressed two patients was tested were infected West Nile Virus White blood cell with COVID-19
[DOI] 10.1016/j.jns.2021.120023 PMC 바로가기 [Article Type] Article

A novel SARS-CoV-2 related coronavirus in bats from Cambodia

캄보디아 박쥐의 신종 SARS-CoV-2 관련 코로나바이러스

Article

Published on 2021-11-092022-09-10
Journal: Nature Communications [Category] MERS, SARS, 치료기술,

Inflammation-type dysbiosis of the oral microbiome associates with the duration of COVID-19 symptoms and long COVID

Research Article

Published on 2021-10-222022-10-30
Journal: JCI Insight [Category] COVID-19, MERS, SARS,

Microbiome Profiling Using Shotgun Metagenomic Sequencing Identified Unique Microorganisms in COVID-19 Patients With Altered Gut Microbiota

Microbiology

Published on 2021-10-112022-10-31
Journal: Frontiers in Microbiology [Category] COVID-19,

[키워드] Affect alteration Altered Bacteroide Bacteroidete Bifidobacterium longum Classifier Clostridium COVID-19 COVID-19 patients diagnostic disease severity distress eight Enterobacter Erysipelotrichaceae Eubacterium examined Firmicute Fusobacterium gastrointestinal symptoms gut microbiota healthy control Identified Imbalance Infection KEGG management marker metagenomic sequencing microbial Microbiome microorganism Patient patients with COVID-19 Prevotella Profiling progression provide random respiratory virus SARS-CoV-2 shotgun Spearman’s correlation Streptococcus Streptococcus salivarius subset Symptoms syndrome therapy understanding unique
[DOI] 10.3389/fmicb.2021.712081 PMC 바로가기 [Article Type] Microbiology

Evaluation of superinfection, antimicrobial usage, and airway microbiome with metagenomic sequencing in COVID-19 patients: A cohort study in Shanghai

COVID-19 환자의 메타게놈 염기서열 분석을 통한 중복 감염, 항균 사용 및 기도 미생물군집 평가: 상하이 코호트 연구

Article

Published on 2021-10-012022-09-11
Journal: Journal of microbiology, immunology, and infection [Category] SARS, 유전자 메커니즘, 치료기술, 치료제,

[키워드] accounted airway Analysis analyzed antimicrobial Antimicrobials Bacteremia carbapenem center clinical clinical benefit Co-infection Cohort cohort study COVID-19 COVID-19 patient COVID-19 patients Critically ill critically ill COVID-19 patients detect develop Escalation Fungal infection help high risk information Intensive intubation investigated laboratory-confirmed management mechanical ventilation metagenomic sequencing Microbiome microbiota Mild Mortality mortality rate Non-COVID-19 Patient Precision Public Retrospective study semi-quantitative severe COVID-19 severe COVID-19 patient severe patients Shanghai Shanghai Public Health Clinical Center significantly subgroups suggested superinfection Surveillance targeted therapy therapy total population virus
[DOI] 10.1016/j.jmii.2021.03.015 PMC 바로가기 [Article Type] Article