Developing a Personal Protective Equipment Calculator During the COVID-19 PandemicArticle Published on 2022-10-132023-07-10 Journal: Disaster Medicine and Public Health Preparedness [Category] COVID19(2023년), [키워드] COVID-19 Personal protective equipment Software [DOI] 10.1017/dmp.2022.238
Interactions of Co, Cu, and non-metal phthalocyanines with external structures of SARS-CoV-2 using docking and molecular dynamicsArticle Published on 2022-02-282022-10-04 Journal: Scientific Reports [Category] COVID19(2023년), MERS, SARS, 치료제, [키워드] Adsorption antagonist approach approaches atomic candidate caused Characteristics characterized Cobalt Computational models Computational neuroscience Computational platforms and environments Contamination contribute copper COVID-19 pandemic deviation docking Dynamics envelope protein Gibbs free energy glycoprotein information inhibitor Interaction lethality rate Ligand macromolecules Masks molecular Molecular docking study molecular dynamics New coronavirus occur predict protease Proteases Protein analysis Protein function predictions provided residue SARS-CoV-2 Software solvent spike Structure structures Virtual drug screening virus were used [DOI] 10.1038/s41598-022-07396-w PMC 바로가기 [Article Type] Article
Detecting SARS-CoV-2 lineages and mutational load in municipal wastewater and a use-case in the metropolitan area of Thessaloniki, GreeceArticle Published on 2022-02-172022-10-04 Journal: Scientific Reports [Category] COVID19(2023년), SARS, 바이오마커, 변종, 유전자 메커니즘, [키워드] Alpha variant approach B.1.1.7 Community Computational biology and bioinformatics correlation COVID-19 pandemic domination evaluated Evolution Github Greece High-throughput screening methodology MONITOR Mutation Next-generation sequencing NGS Patient Prevalence produced Registered SARS-CoV-2 lineage SARS-CoV-2 RNA SARS-CoV-2 variant Sequencing Software Spread Thessaloniki variant virus was tested [DOI] 10.1038/s41598-022-06625-6 PMC 바로가기 [Article Type] Article
ViralFlow: A Versatile Automated Workflow for SARS-CoV-2 Genome Assembly, Lineage Assignment, Mutations and Intrahost Variant DetectionArticle Published on 2022-01-232022-10-28 Journal: Viruses [Category] COVID-19, SARS, [키워드] amplicon sequencing data Analysis assembly bioinformatics Clusters coronavirus COVID-19 pandemic CPU core detection driven by FIVE genome assembly genomic Genomic analysis Genomic surveillance genomic variants Genomics genotyping gold standard highlight Illumina implementation less Lineage lineages memory methodology MONITOR Mutation provided respiratory SARS-CoV-2 SARS-CoV-2 genomic data Software Spread variants virus virus bioinformatics viruses [DOI] 10.3390/v14020217 PMC 바로가기 [Article Type] Article
MRFGRO: a hybrid meta-heuristic feature selection method for screening COVID-19 using deep featuresMRFGRO : 깊은 기능을 사용하여 Covid-19 스크리닝을위한 하이브리드 메타 허리 기능 선택 방법Article Published on 2021-12-152022-09-01 Journal: Scientific Reports [Category] 진단, 치료기술, [키워드] Accuracy affected Algorithm Analysis approach both lungs cause Chain Reaction chest CT-scan CNN CNNs Computed tomography computer Computer science Convolutional neural networks COVID-19 COVID-19 diagnosis dataset datasets Diagnosis disease feature first stage foraging global pandemic globe Golden Ratio Health Organization Image analysis Infection Infectious diseases less Local lung Lung disease Lung diseases Lungs MONITOR parameter polymerase chain reaction Ratio Ray real-time reverse transcription-polymerase chain reaction respiratory Respiratory disease Reverse transcription-polymerase chain reaction RT-PCR Scientific data Software Spread stages subset upper respiratory tract WHO World Health Organization [DOI] 10.1038/s41598-021-02731-z PMC 바로가기 [Article Type] Article
TCR meta-clonotypes for biomarker discovery with tcrdist3 enabled identification of public, HLA-restricted clusters of SARS-CoV-2 TCRstcrdist3를 사용한 바이오마커 발견을 위한 TCR 메타 클론형으로 SARS-CoV-2 TCR의 공개 HLA 제한 클러스터 식별 가능Research Article Published on 2021-11-302022-09-10 Journal: eLife [Category] MERS, SARS, 바이오마커, 치료기술, 치료제, [키워드] Amino acid Analysis Antigen antigen exposure biochemically Biomarker Biomarkers can be used clinically Cluster cohorts complicate COVID-19 patient COVID-19 patients epitope Epitopes Evidence evidence of expressed facilitate false discovery rate feature flexible framework Genotype group HLA HLA allele Human human leukocyte antigen immune repertoire independent individuals information leukocyte open-source software Patient reflect restriction SARS-CoV-2 SARS-CoV-2 antigen Sequencing Software T cell receptor T-cell receptor T-Cell Receptors TCR TCRs the SARS-CoV-2 utility [DOI] 10.7554/eLife.68605 PMC 바로가기 [Article Type] Research Article
Jumper enables discontinuous transcript assembly in coronaviruses점퍼는 코로나바이러스에서 불연속 전사 조립을 가능하게 합니다.Article Published on 2021-11-182022-09-10 Journal: Nature Communications [Category] MERS, SARS, 유전자 메커니즘, 치료제, [키워드] alignment analyses Analysis assembly canonical classical conditions coronavirus develop discontinuous transcription drug response eukaryote eukaryotes expressed expression Gene Expression Genome informatics identify JUMPER likelihood MERS-CoV Nidovirale Nidovirales outperform predict produced reveal RNA polymerase RNA splicing RNA-dependent RNA polymerase SARS-CoV-1 SARS-CoV-2 Software subsequent supported transcript transcriptional change Transcriptional changes Transcriptome transcriptomes transcripts Treatment Viral Viral RNA viral RNA-dependent RNA polymerase virus viruses [DOI] 10.1038/s41467-021-26944-y PMC 바로가기 [Article Type] Article
Efficient and precise single-cell reference atlas mapping with SymphonyArticle Published on 2021-10-072022-10-04 Journal: Nature Communications [Category] 유전자 메커니즘, [키워드] Algorithm annotation Cell cell type cell types CITE-seq complex Computational models Data integration datasets developmental disease donors downstream efficient expression fetal Hematopoiesis identify increasingly liver memory T cells pancreatic Phenotypes predict recent reference genome Sequencing sequencing read Single Cell single-cell single-cell RNA-seq dataset Software surface protein trajectory transfer [DOI] 10.1038/s41467-021-25957-x PMC 바로가기 [Article Type] Article
SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysisTechnical Note Published on 2021-09-282022-10-31 Journal: GigaScience [Category] COVID-19, SARS, [키워드] acute respiratory syndrome Analysis antibody B-cell Complete coronavirus coronavirus disease COVID-19 datasets finding help Immunoglobulin immunoglobulin repertoires lack neutralizing antibody Patient provide repertoire researcher SARS-CoV-2 sequence Sequencing single-cell Software statistical analysis was used [DOI] 10.1093/gigascience/giab050 PMC 바로가기 [Article Type] Technical Note
covid19.Explorer : a web application and R package to explore United States COVID-19 dataBioinformatics Published on 2021-08-202022-10-28 Journal: PeerJ [Category] COVID-19, [키워드] age Analysis caused characterized China Course COVID-19 COVID-19 infection death deaths develop Effectiveness Epidemiology facilitate group groups help Infectious disease Intervention lockdown Measures pandemic R package risk SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 pandemic Software the disease the SARS-CoV-2 United State virus Wuhan [DOI] 10.7717/peerj.11489 PMC 바로가기 [Article Type] Bioinformatics