Whole-genome long-read sequencing to unveil Enterococcus antimicrobial resistance in dairy cattle farms exposed a widespread occurrence of Enterococcus lactisResearch Article Published on 2024-02-172024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] antimicrobial resistance dairy cattle Enterococcus Enterococcus faecalis Enterococcus faecium Enterococcus lactis long-read WGS Minimum inhibitory concentration whole-genome sequencing [DOI] 10.1128/spectrum.03672-23 PMC 바로가기 [Article Type] Research Article
S-Gene Target Failure as an Effective Tool for Tracking the Emergence of Dominant SARS-CoV-2 Variants in Switzerland and Liechtenstein, Including Alpha, Delta, and Omicron BA.1, BA.2, and BA.4/BA.5Article Published on 2024-02-032024-09-05 Journal: Microorganisms [Category] update2024, [키워드] S-gene target failure SARS-CoV-2 Surveillance whole-genome sequencing [DOI] 10.3390/microorganisms12020321 PMC 바로가기 [Article Type] Article
High-performance enrichment-based genome sequencing to support the investigation of hepatitis A virus outbreaksResearch Article Published on 2024-01-292024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] culture-independent diagnostics food-borne surveillance Molecular epidemiology public health genomics whole-genome sequencing [DOI] 10.1128/spectrum.02834-23 PMC 바로가기 [Article Type] Research Article
An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic SettingsArticle Published on 2024-01-252024-09-05 Journal: medRxiv [Category] update2024, [키워드] HBV NGS ONT Recombination whole-genome sequencing [DOI] 10.1101/2024.01.19.24301519 PMC 바로가기 [Article Type] Article
Genomic analysis of Salmonella enterica from Metropolitan Manila abattoirs and markets reveals insights into circulating virulence and antimicrobial resistance genotypesMicrobiology Original Research Published on 2024-01-192024-09-05 Journal: Frontiers in Microbiology [Category] update2024, [키워드] antimicrobial resistance genes food chains plasmids Salmonella enterica virulence whole-genome sequencing [DOI] 10.3389/fmicb.2023.1304283 PMC 바로가기 [Article Type] Microbiology Original Research
NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A Rapid, PCR-Free Method for SARS-CoV-2 Whole-Genome Sequencing in Clinical SamplesArticle Published on 2024-01-092024-09-05 Journal: Pathogens [Category] update2024, [키워드] Beta coronaviruses Genomics nanopore sequencing Next-generation sequencing SARS-CoV-2 whole-genome sequencing [DOI] 10.3390/pathogens13010061 PMC 바로가기 [Article Type] Article
SARS-CoV-2 Variants BQ.1 and XBB.1.5 in Wastewater of Aircraft Flying from China to Denmark, 2023article Published on 2023-12-012024-09-05 Journal: Emerging Infectious Diseases [Category] update2024, [키워드] aircraft China coronavirus coronavirus disease COVID-19 COVID-19 nucleic acid testing Denmark PCR respiratory infections SARS SARS-CoV-2 Sequence analysis severe acute respiratory syndrome coronavirus 2 viruses wastewater whole-genome sequencing zoonoses [DOI] 10.3201/eid2912.230717 PMC 바로가기 [Article Type] article
SARS-CoV-2 Nucleocapsid Protein Mutations Found in Switzerland Disrupt N-Gene Amplification in Commonly Used Multiplex RT-PCR AssayCommunication Published on 2023-11-242024-09-05 Journal: Pathogens [Category] update2024, [키워드] polymerase chain reaction SARS-CoV-2 target failure whole-genome sequencing [DOI] 10.3390/pathogens12121383 PMC 바로가기 [Article Type] Communication
The Impact of MRSA Colonization on Healthcare-Associated Infections in Long-Term Care Facility Residents: A Whole-Genome Sequencing-Based StudyBrief Report Published on 2023-11-232024-09-05 Journal: Microorganisms [Category] update2024, [키워드] colonization Infection long-term care facilities MRSA Prevalence whole-genome sequencing [DOI] 10.3390/microorganisms11122842 PMC 바로가기 [Article Type] Brief Report
The emergence and successful elimination of SARS-CoV-2 dominant strains with increasing epidemic potential in Taiwan’s 2021 outbreakarticle Published on 2023-11-202024-09-05 Journal: Heliyon [Category] update2024, [키워드] bioinformatics community outbreak epicenter Reproduction number SARS-CoV-2 Spatio-temporal analysis Taiwan Transmission Viral variants whole-genome sequencing [DOI] 10.1016/j.heliyon.2023.e22436 PMC 바로가기 [Article Type] article