Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid BarcodingMethods Manuscript Published on 2020-07-182022-10-27 Journal: Biology Methods & Protocols [Category] COVID-19, [키워드] acute respiratory syndrome Amplicon barcode cause coronavirus coronavirus disease Coverage Critical faster FIVE Genome genome sequence less Nanopore Oxford Patient primer primer sets problem Rapid reduce RNA SARS-CoV-2 SARS-CoV-2 genome sequencing sequence unlikely variant Variation Viral transmission virus whole-genome sequencing [DOI] 10.1093/biomethods/bpaa014 PMC 바로가기 [Article Type] Methods Manuscript
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands Research Published on 2020-07-162022-10-05 Journal: Nature Medicine [Category] SARS, 진단, [키워드] amplification Analysis analyzed assessment Cluster Combination Community coronavirus epidemiological data Epidemiology etiology event France Germany Italy Local Netherland Netherlands outbreak Pneumonia public health Rapid reported SARS-CoV-2 SARS-CoV-2 transmission spread to These data transmission of SARS-CoV-2 virus was used Whole-genome sequence whole-genome sequencing Wuhan [DOI] 10.1038/s41591-020-0997-y [Article Type] Research
Phylogenetic Characterization Reveals Prevalent Shigella flexneri ST100 Clone in Beijing, China, 2005 to 2018계통 발생적 특성 분석이 2005년부터 2018년까지 중국 베이징에서 널리 퍼진 Shigella flexneri ST100 클론을 밝혀냈다.Article Published on 2020-07-152024-07-30 Journal: mSphere [Category] 세균성이질, [키워드] S. flexneri Clonal evolution MDR determinants Population dynamics whole-genome sequencing [DOI] 10.1128/mSphere.00161-20 PMC 바로가기
Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisationRapid Communication Published on 2020-07-052022-10-28 Journal: Virus Evolution [Category] COVID-19, [키워드] Amplicon sequencing amplicon-based enrichment approach ARTIC Network bioinformatics capture method characterisation Complete consensus sequence Coverage COVID-19 COVID-19 outbreak DNA enrichment evaluated Genome genome coverage genomes Genomic surveillance Genomics identity Illumina metagenomic metagenomic sequencing next generation sequencing NGS ONT ORF6 Oxford Nanopore Technology Panel performed producing protocol reference sequence Region required respiratory respiratory sample SARS-CoV-2 sequenced Sequencing SNP threshold Viral load WGS whole-genome sequencing [DOI] 10.1093/ve/veaa075 PMC 바로가기 [Article Type] Rapid Communication
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples임상 샘플에서 직접 SARS-CoV-2 게놈의 대규모 병렬 시퀀싱을 위한 여러 접근 방식Research Published on 2020-06-302022-08-13 Journal: Genome Medicine [Category] SARS, 유전자 메커니즘, [키워드] (coronavirus disease 2019 Accuracy acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Amplicon amplicon method Amplicon sequencing analyses Analysis applied approach approaches best capture capture method caused Characteristics clinical sample clinical samples Complete coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 cultured isolate demonstrated diagnostics Dilution Efficiency eight Emerging infectious diseases Epidemic Epidemiology Evolution examined Factor full-length SARS-CoV-2 genetic information Genome Genome sequencing genomes Genomic surveillance Guidance Hybrid capture inter- and intra-individual variations inter-individual inter-individual and intra-individual variations intra-host dynamics intra-individual variation iSNV knowledge Metatranscriptomic sequencing Multiple Multiplex PCR novel multiplex PCR amplicon offer PCR amplicon Quasispecies reported respiratory Result SARS-CoV-2 SARS-CoV-2 genome scarcity sensitivity Sequencing severe acute respiratory syndrome Coronavirus Therapeutics ultra-high-throughput metatranscriptomic variations Viral Viral load viral loads viral read Viral transmission virus Virus evolution Virus-host interaction Virus-host interactions viruses whole-genome sequencing [DOI] 10.1186/s13073-020-00751-4 PMC 바로가기 [Article Type] Research
Emergence of Mycobacterium leprae Rifampin Resistance Evaluated by Whole-Genome Sequencing after 48 Years of Irregular Treatment48년간의 불규칙한 치료 후 전체 유전체 시퀀싱으로 평가된 마이코박테리움 레프라에 리팜핀 내성의 출현Article Published on 2020-06-232024-08-24 Journal: Med Instrum [Category] 한센병, [키워드] leprosy Mycobacterium leprae relapse emergence resistance rifampin Treatment whole-genome sequencing
Origin of 3 Rabid Terrestrial Animals in Raccoon Rabies Virus–Free Zone, Long Island, New York, USA, 2016–2017Article Published on 2020-06-012023-05-31 Journal: Emerging Infectious Diseases [Category] Fulltext, 조류인플루엔자, [키워드] Epidemiology Long Island New York oral rabies vaccination phylogenetic analyses Phylogeny rabies rabies-free zone raccoon variant United States viruses whole-genome sequencing wildlife surveillance zoonoses [DOI] 10.3201/eid2606.191700 PMC 바로가기
Investigation of a salmonellosis outbreak linked to French toast sandwich with the use of surveillance camera, Taiwan, 2018article Published on 2020-05-312024-09-01 Journal: Epidemiology and Infection [Category] 살모넬라증, [키워드] case-control study Foodborne outbreak Pulsed-field gel electrophoresis salmonellosis whole-genome sequencing [Article Type] article
Circulation of emerging NDM-5-producing Escherichia coli among humans and dogs in EgyptArticle Published on 2020-05-012023-06-22 Journal: Zoonoses and Public Health [Category] 조류인플루엔자, [키워드] Egypt Escherichia coli insertion sequences NDM-5 plasmid replicon whole-genome sequencing [DOI] 10.1111/zph.12676
Concordance of SNP- and allele-based typing workflows in the context of a large-scale international Salmonella Enteritidis outbreak investigationArticle Published on 2020-03-312024-09-06 Journal: Microb Genom [Category] 살모넬라증, [키워드] Epidemiology hierarchical clustering Infectious disease Surveillance Unsupervised machine learning whole-genome sequencing PMC 바로가기