A review on viral data sources and search systems for perspective mitigation of COVID-19Review Published on 2020-12-222023-07-01 Journal: Briefings in Bioinformatics [Category] SARS, [키워드] COVID-19 data harmonization Epidemic Genomics integration and search Metadata viral sequences [DOI] 10.1093/bib/bbaa359 PMC 바로가기 [Article Type] Review
Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome1001 Published on 2020-06-102022-10-28 Journal: Royal Society Open Science [Category] COVID-19, [키워드] 2019-nCoV acute respiratory syndrome Analysis approach binding bioinformatics Clinicians conducted coronavirus coronavirus SARS-CoV-2 COVID-19 COVID-19 pandemic Diagnosis diagnostic Genome in silico information Laboratory Patient PCR PCR assay PCR assays polymerase chain Polymerase chain reaction (PCR) Presence primer–template mismatch professional Region responsible SARS-CoV-2 sequence variability sequence variation target region viral genome viral sequence viral sequences was performed WHO World Health Organization [DOI] 10.1098/rsos.200636 PMC 바로가기 [Article Type] 1001
VADR: validation and annotation of virus sequence submissions to GenBankSoftware Published on 2020-05-242022-10-27 Journal: BMC Bioinformatics [Category] Coronavirus, Fulltext, MERS, [키워드] added alignment Analysis annotation annotations automatically Biotechnology center Characteristics checked curated Dengue GenBank hidden markov model identify IMPROVE incrementally Influenza virus Intervention Local mapped NCBI ncRNA Norovirus nucleotide nucleotide sequence Other Protein RefSeq researcher Result SARS-CoV-2 sequence sequence submission viral sequence viral sequences virus virus [DOI] 10.1186/s12859-020-3537-3 PMC 바로가기 [Article Type] Software
Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins ( Manis javanica )Article Published on 2019-10-242022-10-28 Journal: Viruses [Category] Coronavirus, MERS, [키워드] Manis javanica approach carried Community contig coronavirus de novo dominant evaluate help hosts identifying mammals metagenomics Molecular epidemiology pangolin pangolins pathogen pathogenic virus provide Revealed Sendai virus sequence similarity viral sequences virome virus viruses [DOI] 10.3390/v11110979 PMC 바로가기 [Article Type] Article