ShigaPass: an in silico tool predicting Shigella serotypes from whole-genome sequencing assembliesArticle Published on 2023-03-312024-09-07 Journal: Microb Genom [Category] 세균성이질, [키워드] in silico serotyping ShigaPass Shigella whole-genome sequencing PMC 바로가기
Genomic Characterization and Genetic Profiles of Salmonella Gallinarum Strains Isolated from Layers with Fowl Typhoid in Colombia콜롬비아에서 조류 티푸스에 감염된 산란계에서 분리된 살모넬라 갈리나룸 균주의 유전체 특성화 및 유전적 프로필Article Published on 2023-03-292024-08-22 Journal: Genes [Category] 살모넬라증, [키워드] antimicrobial resistance genes Mobile genetic elements multilocus sequence typing plasmids prophage Salmonella Gallinarum Salmonella pathogenicity island vaccine 9R virulence factors whole-genome sequencing
Implementation and Evaluation of the Clear Dx Platform for Sequencing SARS-CoV-2 Genomes in a Public Health Laboratoryarticle Published on 2023-03-282024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] Clear Dx COVID-19 Genomic surveillance SARS-CoV-2 whole-genome sequencing [DOI] 10.1128/spectrum.04957-22 PMC 바로가기 [Article Type] article
Subregional origins of emerging SARS-CoV-2 variants during the second pandemic wave in Côte d’Ivoirearticle Published on 2023-03-182024-09-05 Journal: Virus genes [Category] update2024, [키워드] phylogeography SARS-CoV-2 sub-Saharan Africa VoC VOI whole-genome sequencing [DOI] 10.1007/s11262-023-01984-2 PMC 바로가기 [Article Type] article
Comprehensive analysis of clinical indications and viral strain variants among patients infected with SARS-CoV-2 in Inner Mongolia, Chinaarticle Published on 2023-03-112024-09-05 Journal: Virus genes [Category] update2024, [키워드] mutations SARS-CoV-2 spike glycoprotein whole-genome sequencing [DOI] 10.1007/s11262-023-01986-0 PMC 바로가기 [Article Type] article
Assessment of attenuation of varicella-zoster virus vaccines based on genomic comparisonArticle Published on 2023-03-012023-05-31 Journal: Journal of medical virology [Category] 두창, 수두, 홍역, [키워드] attenuation genomic comparison single-nucleotide polymorphism Varicella-Zoster Virus whole-genome sequencing [DOI] 10.1002/jmv.28590
Improved hepatitis delta virus genome characterization by single molecule full-length genome sequencing combined with VIRiONT pipelineArticle Published on 2023-03-012023-06-12 Journal: Journal of medical virology [Category] B형 간염, [키워드] genotyping HDV editing hepatitis delta virus (HDV) local pipeline Long-read sequencing whole-genome sequencing [DOI] 10.1002/jmv.28634
Characterization of a Novel Pathogen in Immunocompromised Patients: Elizabethkingia anophelis —Exploring the Scope of Resistance to Contemporary Antimicrobial Agents and β-lactamase InhibitorsMajor Article Published on 2023-02-282024-09-05 Journal: Open Forum Infectious Diseases [Category] update2024, [키워드] Cefiderocol Elizabethkingia metallo-β-lactamase susceptibility testing whole-genome sequencing [DOI] 10.1093/ofid/ofad014 PMC 바로가기 [Article Type] Major Article
Microbiological analysis and characterization of Salmonella and ciprofloxacin-resistant Escherichia coli isolates recovered from retail fresh vegetables in Shaanxi Province, Chinaarticle Published on 2023-02-282024-09-01 Journal: International Journal of Food Microbiology [Category] 살모넬라증, [키워드] Ciprofloxacin-resistant Escherichia coli Coliforms Fresh vegetables molecular characteristics Salmonella whole-genome sequencing [Article Type] article
Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination, and Drug Susceptibility Predictionarticle Published on 2023-02-232024-09-05 Journal: Journal of Clinical Microbiology [Category] update2024, [키워드] antimicrobial resistance methods development Molecular epidemiology Tuberculosis whole-genome sequencing [DOI] 10.1128/jcm.01578-22 PMC 바로가기 [Article Type] article