Deciphering the Tangible Spatio-Temporal Spread of a 25-Year Tuberculosis Outbreak Boosted by Social Determinantsarticle Published on 2023-02-142024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] Genomic epidemiology outbreak phylodynamics Tuberculosis whole-genome sequencing [DOI] 10.1128/spectrum.02826-22 PMC 바로가기 [Article Type] article
A custom hepatitis A virus assay for whole-genome sequencingArticle Published on 2023-02-012023-05-31 Journal: Journal of virological methods [Category] A형 간염, [키워드] AmpliSeq™ Ghost hepatitis A Molecular epidemiology whole-genome sequencing [DOI] 10.1016/j.jviromet.2022.114649
Combined Phylogeographic Analyses and Epidemiologic Contact Tracing to Characterize Atypically Pathogenic Avian Influenza (H3N1) Epidemic, Belgium, 2019Article Published on 2023-02-012023-06-03 Journal: Emerging Infectious Diseases [Category] Fulltext, 조류인플루엔자, [키워드] Avian Influenza Belgium Influenza Molecular epidemiology respiratory infections viruses whole-genome sequencing [DOI] 10.3201/eid2902.220765 PMC 바로가기
Rapid and Flexible RT-qPCR Surveillance Platforms To Detect SARS-CoV-2 Mutationsarticle Published on 2023-01-092024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] Large-scale screening National surveillance program National surveillance system RT-qPCR platforms SARS-CoV-2 Signature mutations variant of concern variant PCR variants of concern whole-genome sequencing [DOI] 10.1128/spectrum.03591-22 PMC 바로가기 [Article Type] article
Lessons learned: use of WGS in real-time investigation of suspected intrahospital SARS-CoV-2 outbreaksArticle Published on 2023-01-012023-07-10 Journal: The Journal of hospital infection [Category] COVID19(2023년), [키워드] COVID-19 Genomic epidemiology healthcare-associated SARS-CoV-2 Surveillance whole-genome sequencing [DOI] 10.1016/j.jhin.2022.10.003 PMC 바로가기
Detection of Clade 2.3.4.4b Avian Influenza A(H5N8) Virus in Cambodia, 2021Article Published on 2023-01-012023-06-14 Journal: Emerging Infectious Diseases [Category] Fulltext, 조류인플루엔자, [키워드] Avian influenza virus Cambodia Disease surveillance food safety H5N8 Influenza Live poultry markets pathogenic phylogenetics respiratory infections viruses whole-genome sequencing zoonoses [DOI] 10.3201/eid2901.220934 PMC 바로가기
SARS-CoV-2 shedding dynamics and transmission in immunosuppressed patients면역 억제 환자의 SARS-CoV-2 발산 역학 및 전파Article Published on 2022-12-012022-09-11 Journal: Virulence [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus adjust analysed anatomic site characterized collected conducted coronavirus Diagnosis Diversity dominant E484K first positive fitness genetic change Genome genomic Host hosts household transmission Immunosuppressed immunosuppressed patient immunosuppressed patients in urine in vivo Infection Interaction knowledge long-term viral shedding mother mutate Mutation mutation dynamics N501Y occurred P681R Patient replicate residue residues SARS-CoV-2 SARS-CoV-2 evolution selective Sequencing severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus 2 specific treatment Spike protein spread to Substitution temporal dynamics Transmission two patients Urine variant variant of concern variants variants of concern virus whole genome Whole genome sequencing whole-genome sequencing [DOI] 10.1080/21505594.2022.2101198 PMC 바로가기 [Article Type] Article
Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics InitiativeArticle Published on 2022-11-032022-11-15 Journal: PLoS Genetics [Category] SARS, 변종, 진단, [키워드] Analysis association chromosome Cohort controls country COVID-19 Deleterious disease expected Genetic genetics Genome-wide association study identify increase in initiative loci outcome outcomes Pathogenesis performed rare variant Result severe disease Support susceptibility the SARS-CoV-2 TLR7 Toll-like receptor variant whole-genome sequencing with COVID-19 [DOI] 10.1371/journal.pgen.1010367 PMC 바로가기
Antibody response and intra-host viral evolution after plasma therapy in COVID-19 patients pre-exposed or not to B-cell-depleting agentsArticle Published on 2022-11-012022-11-15 Journal: British Journal of Haematology [Category] SARS, 진단, [키워드] anti-CD20 anti-CD20 therapy Anti-spike anti-Spike IgG antibody antibody kinetics B-cell clinical care clinical status clinical symptom Complete contribute convalescent convalescent plasma COVID-19 patient Decline donors eligible evaluated Follow-up hospitalized COVID-19 patients humoral Humoral immunity IgG Immune escape Immunocompromised Immunocompromised patients Immunoglobulin impair lymphopenia majority management mRNA-based vaccine mRNA-based vaccine plasma mutation rate Patient patients treated plasma receiving SARS-CoV-2 SARS-CoV-2 viral load SARS-CoV-2-specific antibodies severity spike mutations survival therapy titre viral control viral evolution virus clearance WHO whole-genome sequencing World Health Organization [DOI] 10.1111/bjh.18450 PMC 바로가기
Multidrug resistance and virulence genes carried by mobile genomic elements in Salmonella enterica isolated from live food animals, processed, and retail meat in North Carolina, 2018-2019article Published on 2022-10-312024-09-01 Journal: International Journal of Food Microbiology [Category] 살모넬라증, [키워드] bioinformatics food safety Pathogen fitness Plasmid assembly whole-genome sequencing [Article Type] article