SARS-CoV-2 genomic epidemiology: data and sequencing infrastructureSARS-CoV-2 게놈 역학: 데이터 및 시퀀싱 인프라Article Published on 2022-09-012022-09-11 Journal: Future Microbiology [Category] COVID19(2023년), SARS, 유전자 메커니즘, [키워드] available data computation country COVID-19 case Critical develop Epidemiology funds genomic Genomic surveillance identify implementation Influenza initiative lack Low- and middle-income countries mobilization molecular Molecular epidemiology Next-generation sequencing next-generation sequencing platforms Outbreaks Oxford Nanopore MinION platform SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 sequencing Sequencing significantly higher Support Surveillance viral lineages whole-genome whole-genome sequencing [DOI] 10.2217/fmb-2021-0207 PMC 바로가기 [Article Type] Article
Use of saliva and RT-PCR screening for SARS-CoV-2 variants of concern: Surveillance and monitoring우려되는 SARS-CoV-2 변종에 대한 타액 및 RT-PCR 스크리닝 사용: 감시 및 모니터링Article Published on 2022-09-012022-09-11 Journal: Journal of medical virology [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] Alpha applied approach Beta Chain Reaction characterization circulation collected complementary COVID-19 COVID-19 pandemic described facilitate Gamma genomic Genomic surveillance hospital implementation invasive less molecular test MONITOR Patient PerkinElmer polymerase chain polymerase chain reaction positive positive sample reverse transcription reverse transcription polymerase chain reaction RT-PCR RT-qPCR Saliva saliva sample saliva samples SARS-CoV-2 SARS-CoV-2 RNA SARS-CoV-2 variant SARS-CoV-2 variants screened Sequencing specimen specimen collection Spread Surveillance tested variants variants of concern virus VoC [DOI] 10.1002/jmv.27839 PMC 바로가기 [Article Type] Article
Genomic surveillance of SARS-COV-2 reveals diverse circulating variant lineages in Nairobi and Kiambu Counties, KenyaArticle Published on 2022-09-012022-11-15 Journal: BMC Genomics [Category] SARS, 변종, 유전자 메커니즘, 치료기술, 치료제, [키워드] A.23.1 Analysis approaches B.1 B.1.1 B.1.1.7 B.1.617.2 China circulating COVID-19 outbreak Europe events exhibiting genetic diversity genetic isolate genomic Genomic surveillance Genomics infection control infections Kenya Lineage lineages Mutation pandemic Phylogeny populations predominant provide quality check Region regions reveal Sample SARS-CoV-2 SARS-CoV-2 epidemiology SARS-CoV-2 isolate sequenced South Africa Surveillance United Kingdom USA Vaccine variant [DOI] 10.1186/s12864-022-08853-6 PMC 바로가기
Mutational dynamics across VOCs in International travellers and Community transmission underscores importance of Spike-ACE2 interaction국제 여행자의 VOC와 지역 사회 전파에 걸친 돌연변이 역학은 Spike-ACE2 상호 작용의 중요성을 강조합니다.Article Published on 2022-09-012022-09-11 Journal: Microbiological research [Category] COVID19(2023년), SARS, 변종, [키워드] A570D Alpha analysed B.1.617.2 binding binding affinity change Community community transmission comparable COVID-19 case COVID-19 pandemic D1118H D950N Delta demonstrated different time point different time points disequilibrium early phase emergence Evolution functional G142D Genomic surveillance India Interaction International investigated L452R Lineage linkage Linkage disequilibrium Mutation mutation analysis mutations N501Y notable omicron ORF1 ORF1ab overlap predict raised S982A SARS-CoV-2 selective spike spike mutations spike-ACE2 Spread Structural analysis Transmissibility Transmission transmission pattern unique vaccination variants variants of concern VoC VOCs [DOI] 10.1016/j.micres.2022.127099 PMC 바로가기 [Article Type] Article
Correlation between Clinical and Wastewater SARS-CoV-2 Genomic Surveillance, Oregon, USAArticle Published on 2022-09-012022-11-16 Journal: Emerging Infectious Diseases [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] acute respiratory syndrome clinical coronavirus coronavirus disease correlation correlation coefficient COVID-19 Effectiveness estimate Evidence genomic genomic sequencing Genomic surveillance Oregon proportion respiratory infections SARS SARS-CoV-2 severe acute respiratory syndrome coronavirus 2 specimen Surveillance United States USA variant viruses wastewater wastewater surveillance Wastewater-based epidemiology zoonoses [DOI] 10.3201/eid2809.220938 PMC 바로가기
SARS-CoV-2 genomic surveillance as an evidence-based infection control approach in an offshore petroleum employee population근해 석유 직원 인구에서 증거 기반 감염 통제 접근 방식으로서의 SARS-CoV-2 게놈 감시Article Published on 2022-09-012022-09-11 Journal: American journal of infection control [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] Analysis approach can be used Cluster concerning contributed COVID-19 Efficacy epidemiological data Epidemiology evaluate genomic genomic data Genomic surveillance Gulf Gulf of Mexico Industrial Industrial hygiene Industrial hygienist infecting Infection infection control information International involved limit outbreak Outbreaks over PCR Phylogenetic analysis platform Population Positive test protocol quarantine reported SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 genomic surveillance sequenced serology Spread suggested Support Surveillance Symptom tested testing protocols transmissions variant viral strain Viral transmission was used WHO Whole genome sequencing [DOI] 10.1016/j.ajic.2022.05.008 PMC 바로가기 [Article Type] Article
SARS-CoV-2 VOCs, Mutational diversity and clinical outcome: Are they modulating drug efficacy by altered binding strength?Research article Published on 2022-09-012022-10-05 Journal: Genomics [Category] SARS, 변종, [키워드] Analysis binding comprehensive analysis coronavirus COVID-19 pandemic Delta disease disease severity Drug efficacy Efficacy Genomic surveillance indicate less modulating molecular docking Mortality mutant Mutation mutation analysis NTD omicron outcome patients performed Protein RBD recovered recovered patients respiratory SARS-CoV-2 SARS-CoV-2 genome sequenced significantly spike syndrome T19R the patient the RBD variants of concern VoC VOCs [DOI] 10.1016/j.ygeno.2022.110466 [Article Type] Research article
Genomic surveillance of SARS-CoV-2 by sequencing the RBD region using Sanger sequencing from North KeralaArticle Published on 2022-08-252022-11-16 Journal: Frontiers in Public Health [Category] SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] analyzed Community country Follow-up generate genomic Genomic surveillance gold standard hotspot Immune escape India Kerala lab management medium next generation sequencing NGS North nucleotide nucleotide sequence Patient processed Public health interventions RBD Receptor binding domain Region Research Sanger sequencing SARS-CoV-2 SARS-CoV-2 variant Sequencing severity spike gene spike gene sequencing. Surveillance the RBD turn variant variants of SARS-CoV-2 was done [DOI] 10.3389/fpubh.2022.974667 PMC 바로가기
Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study워싱턴 주에서 확인된 사례 중 중증 급성 호흡기 증후군 코로나바이러스 2(SARS-CoV-2) 변종과 코로나바이러스 질병 2019(COVID-19) 입원 위험 간의 연관성: 후향적 코호트 연구Article Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, [키워드] 95% CI 95% confidence interval acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 age Alpha Analysis Beta Chain Reaction collected Confirmed coronavirus coronavirus 2 coronavirus disease Coronavirus disease 2019 COVID-19 Cox proportional hazard Cox proportional hazards model Delta disease severity Effects Gamma genomic Genomic surveillance hazard ratio hazard ratios hospital Hospitalization Hospitalized include individual Infection Lineage no significant difference omicron pandemic Patient polymerase chain polymerase chain reaction positive proportional hazards model Reporting respiratory resulting retrospective cohort study reverse transcription reverse transcription polymerase chain reaction risk RT-PCR SARS-CoV-2 sequenced Sex specimen Support Surveillance System vaccination variant variants viral genome Washington [DOI] 10.1093/cid/ciac279 PMC 바로가기 [Article Type] Article
Rapid Detection and Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Omicron Variant in a Returning Traveler귀국 여행자의 중증 급성 호흡기 증후군 코로나바이러스 2(SARS-CoV-2) 오미크론 변이체의 신속한 감지 및 특성화Case Reports Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, 치료기술, 치료제, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Chain Reaction characterization clinical care Community coronavirus coronavirus 2 detection genomic Genomic surveillance Mild symptom mild symptoms multiplex Multiplex PCR occurred omicron Omicron variant polymerase chain polymerase chain reaction polymorphism Rapid respiratory SARS-CoV-2 severe acute respiratory syndrome Coronavirus single-nucleotide single-nucleotide polymorphism Surveillance Vaccine variant Viral genome sequencing [DOI] 10.1093/cid/ciac032 PMC 바로가기 [Article Type] Case Reports