Genomic evidence of co-identification with Omicron and Delta SARS-CoV-2 variants: a report of two casesArticle Published on 2022-09-012022-11-16 Journal: International Journal of Infectious Diseases [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] acute respiratory syndrome assigned B.1.1.529 Co-infection coronavirus COVID-19 Delta Evidence Lineage omicron reported SARS-CoV-2 SARS-CoV-2 co-infection SARS-CoV-2 variants Sequencing South Africa variant variants whole-genome sequencing World Health Organization [DOI] 10.1016/j.ijid.2022.05.043 PMC 바로가기
Infection with SARS-CoV-2 Omicron Variant 24 Days after Non-Omicron Infection, Pennsylvania, USAArticle Published on 2022-09-012022-11-16 Journal: Emerging Infectious Diseases [Category] SARS, 변종, [키워드] acute respiratory syndrome coronavirus coronavirus disease COVID-19 COVID-19 vaccination Day first positive omicron Pennsylvania respiratory infections SARS-CoV-2 SARS-CoV-2 test severe acute respiratory syndrome coronavirus 2 suggested symptomatic infection symptomatic SARS-CoV-2 infection United States USA vaccine-preventable diseases variant viruses whole-genome sequencing zoonoses [DOI] 10.3201/eid2809.220539 PMC 바로가기
Sequencing and mutations analysis of the first recorded SARS-CoV-2 Omicron variant during the fourth wave of pandemic in IraqArticle Published on 2022-09-012022-11-15 Journal: The Brazilian journal of infectious diseases : an [Category] SARS, 변종, 진단, [키워드] Analysis combating conducted coronavirus disease country COVID-19 epitope GISAID database globe Illumina Immune escape immunogenic initial Iraq molecular mutated Mutation Next-generation sequencing omicron Omicron variant pandemic performed provide Receptor binding domain recorded reference sequence representing retrieved SARS-CoV-2 sequence Sequence analysis sequenced spike glycoprotein the SARS-CoV-2 virus vaccination Vaccine Vaccine development variant variant of concern was performed whole-genome sequencing [DOI] 10.1016/j.bjid.2022.102677 PMC 바로가기
Rapid Detection of the Omicron (B.1.1.529) SARS-CoV-2 Variant Using a COVID-19 Diagnostic PCR AssayArticle Published on 2022-08-312022-11-15 Journal: Microbiology Spectrum [Category] COVID19(2023년), SARS, 변종, 치료기술, 치료제, [키워드] acute respiratory syndrome Analysis approach B.1.1.529 Beta coronavirus COVID-19 COVID-19 patient Delta detect detection develop diagnostic effort Epsilon fraction Future Gamma help identify IMPROVE monoclonal antibodies Mutation N gene N-gene nucleocapsid occurred omicron Omicron SARS-CoV-2 variant Patient PCR PCR assay PCR assays point-of-care positive positive result primer Rapid rapid testing reduce respiratory tract sample risk SARS-CoV-2 SARS-CoV-2 RNA SARS-CoV-2 variant Sequencing shown tested therapeutic Topic variant VoC VOCs were assessed whole-genome whole-genome sequencing [DOI] 10.1128/spectrum.00990-22 PMC 바로가기
Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation SequencingArticle Published on 2022-08-312022-11-15 Journal: Microbiology Spectrum [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] Accuracy Amplicon amplified Beta caused clinical sample concern correlation COVID-19 Delta described develop died DNA sequence eight genomes genotyping GISAID identification include isolate Local manuscript Mutation mutations Next-generation sequencing NGS nine omicron one-step PCR pandemic patients PCR public health Rapid RNA RNA sample SARS-CoV-2 sequenced Seven Spearman Spike protein tested the SARS-CoV-2 the spike protein Treatment vaccination variant variants variants of concern variants of concern (VOC) variants of interest Variants of interest (VOI). virulent VoC VOCs was used website were used WGS Whole-genome sequence whole-genome sequencing Wuhan isolate [DOI] 10.1128/spectrum.00736-22 PMC 바로가기
First Identification of the New Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant (B.1.1.529) in ItalyArticle Published on 2022-08-312022-11-16 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, [키워드] acute respiratory syndrome B.1.1.529 circulation coronavirus coronavirus 2 COVID-19 Effect highlight identification Italian Italy Mutation New omicron profile respiratory SARS-CoV-2 SARS-CoV-2 variant Specific subject Surveillance vaccination efficacy variant Viral variants whole-genome sequencing [DOI] 10.1093/cid/ciab1044 PMC 바로가기
Household Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Alpha Variant-United States, 2021중증급성호흡기증후군 코로나바이러스 2(SARS-CoV-2) 알파 변종-미국, 2021년 가구 전염Article Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, [키워드] 95% confidence interval acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Alpha Asian Avoiding B.1.1.7 biospecimen biospecimens Chain Reaction Characteristics close contact collected confidence interval Contact coronavirus coronavirus 2 COVID-19 Diego estimating equations household Households Infection infection risk infections information investigated lack Lineage lineages Person polymerase chain reaction predominant reduce respiratory Reverse transcription-polymerase chain reaction risk RT-PCR SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 transmission saturation Secondary infection secondary infections serology severe acute respiratory syndrome Coronavirus significantly higher SIRS spring stratified Symptom The United States Transmissibility Transmission transmission rates United States variant white whole-genome sequencing [DOI] 10.1093/cid/ciac125 PMC 바로가기 [Article Type] Article
Genomic Surveillance of SARS-CoV-2 in the Southern Province of Zambia: Detection and Characterization of Alpha, Beta, Delta, and Omicron Variants of ConcernArticle Published on 2022-08-242022-11-16 Journal: Viruses [Category] SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] acute respiratory syndrome African Alpha variant analysed Analysis B.1.1.7 B.1.351 Beta characterization circulation concern conducted coronavirus country COVID-19 deletions Delta detection Epidemiology European Evidence Genome genomic impacted increased risk insertions International Local Missense mutations Mutation mutations non-coding region omicron pandemic positioned predominant Region SARS-CoV-2 significantly spike mutations stop codon Surveillance synonymous Transmission variant variants of concern VoC VOCs whole genome whole-genome sequencing Zambia Zimbabwe [DOI] 10.3390/v14091865 PMC 바로가기
Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Omicron Subvariant BA.2 in a Single-Source Community Outbreak단일 출처 커뮤니티에서 중증 급성 호흡기 증후군 코로나바이러스 2(SARS-CoV-2) 오미크론 하위 변종 BA.2의 급속한 확산Article Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, [키워드] 95% confidence interval acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 analyzed Asia BA.2 sublineage calculated Cluster Community community outbreak coronavirus coronavirus 2 COVID-19 doubling epidemiological epidemiologically Europe genomic Genomic analysis highlight Hong Kong housing estate. individual information involved lockdown measure Mutation omicron Omicron variant outbreak Oxford Nanopore MinION Patient performed Phylogenetic analysis Rapid respiratory SARS-CoV-2 SARS-CoV-2 Omicron variant sequence Sequencing severe acute respiratory syndrome Coronavirus Surveillance Transmissibility unique variant Viral genome sequencing was performed whole-genome sequencing [DOI] 10.1093/cid/ciac203 PMC 바로가기 [Article Type] Article
Advancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 20212021년 독일에서 중증 급성 호흡기 증후군 코로나바이러스 2의 분자 및 게놈 감시를 통한 정밀 백신학 발전Article Published on 2022-08-152022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, 유전자 메커니즘, [키워드] activity acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Advancing Alpha variant Analysis approach Beta collected complement Comprehensive contributed coronavirus coronavirus 2 coronavirus disease Coronavirus disease 2019 dataset deceleration Delta wave Effectiveness effort estimate Evolution expansion facilitated Genetic genomic genomic sequencing Genomic surveillance Germany GISAID immune evasion in vitro incidence incidence estimation indicated Laboratory molecular molecular surveillance Multiple multiple mutations Mutation National neutralization assays observation period pathogen pathogen genomics Phylogenetic analysis powerful tool Precision Public public health Randomly respiratory resulting Robert Koch SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 genomic surveillance sequence sequenced sample Spread Surveillance the SARS-CoV-2 undergo vaccination Vaccination strategies Vaccination strategy Vaccine variant variant of concern variants of concern virus whole-genome sequencing [DOI] 10.1093/cid/ciac399 PMC 바로가기 [Article Type] Article