Highly sensitive wastewater surveillance of SARS-CoV-2 variants by targeted next-generation amplicon sequencing provides early warning of incursion in Victoria, AustraliaPublic and Environmental Health Microbiology Published on 2024-08-162024-09-05 Journal: Applied and Environmental Microbiology [Category] update2024, [키워드] Amplicon sequencing coronavirus COVID-19 Delta Genomic surveillance omicron SARS-CoV-2 wastewater surveillance Wastewater-based epidemiology [DOI] 10.1128/aem.01497-23 PMC 바로가기 [Article Type] Public and Environmental Health Microbiology
RBD amplicon sequencing of wastewater reveals patterns of variant emergence and evolutionArticle Published on 2024-07-122024-09-05 Journal: medRxiv [Category] update2024, [키워드] Amplicon sequencing Receptor-binding domain SARS-CoV-2 variant emergence viral evolution wastewater surveillance [DOI] 10.1101/2024.07.12.24310301 PMC 바로가기 [Article Type] Article
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virusResearch Published on 2024-05-012024-09-05 Journal: BMC Genomics [Category] update2024, [키워드] Amplicon sequencing dengue virus Genomic surveillance Next-generation sequencing whole-genome sequencing [DOI] 10.1186/s12864-024-10350-x PMC 바로가기 [Article Type] Research
Plasmodium falciparum transmission in the highlands of Ethiopia is driven by closely related and clonal parasitesarticle Published on 2024-03-312024-09-01 Journal: Molecular Ecology [Category] 말라리아, [키워드] Amplicon sequencing Ethiopia Genomics malaria Molecular epidemiology next generation sequencing (NGS) pfhrp2/3 Population genetics [Article Type] article
Next Steps: Studying Diabetic Foot Infections with Next-Generation Molecular AssaysArticle Published on 2024-03-172024-09-05 Journal: Current Infectious Disease Reports [Category] update2024, [키워드] Amplicon sequencing amputation metagenomics Metatranscriptomics Microbiome ulcer [DOI] 10.1007/s11908-023-00822-8 PMC 바로가기 [Article Type] Article
DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virusArticle Published on 2023-10-132024-09-05 Journal: medRxiv [Category] update2024, [키워드] Amplicon sequencing dengue virus Genomic surveillance Next-generation sequencing whole-genome sequencing [DOI] 10.1101/2023.10.13.23296997 PMC 바로가기 [Article Type] Article
Low-cost molecular methods to characterise gastrointestinal nematode co-infections of goats in Africaarticle Published on 2023-06-292024-09-05 Journal: Parasites & Vectors [Category] update2024, [키워드] Amplicon sequencing Faecal DNA Haemonchosis High-resolution melt curve Low-resource Nemabiome Species-specific PCR [DOI] 10.1186/s13071-023-05816-y PMC 바로가기 [Article Type] article
Carryover Contamination-Controlled Amplicon Sequencing Workflow for Accurate Qualitative and Quantitative Detection of Pathogens: a Case Study on SARS-CoV-2article Published on 2023-04-262024-09-05 Journal: Microbiology Spectrum [Category] update2024, [키워드] Amplicon sequencing carryover contamination dUTP/UDG SARS-CoV-2 synthetic DNA spike-ins [DOI] 10.1128/spectrum.00206-23 PMC 바로가기 [Article Type] article
Intensity of sample processing methods impacts wastewater SARS-CoV-2 whole genome amplicon sequencing outcomesArticle Published on 2023-03-042024-09-05 Journal: The Science of the total environment [Category] update2024, [키워드] Amplicon sequencing Illumina COVIDseq QIAseq DIRECT RNA fragmentation Sample processing methods Wastewater SARS-CoV-2 [DOI] 10.1016/j.scitotenv.2023.162572 PMC 바로가기 [Article Type] Article
Acute appendicitis manifests as two microbiome state types with oral pathogens influencing severityarticle Published on 2023-01-232024-09-05 Journal: Gut Microbes [Category] update2024, [키워드] adolescents Amplicon sequencing archaea Bacteria children Complicated appendicitis etiopathogenesis fungi metagenome microbial state type [DOI] 10.1080/19490976.2022.2145845 PMC 바로가기 [Article Type] article