Evolution of the viral genomes of SARS-CoV-2 in association with the changes in local condition: a genomic epidemiological study of a suburban city of JapanResource Article: Genomes Explored Published on 2023-10-152024-09-05 Journal: DNA research : an international journal for rapid publication of reports on [Category] update2024, [키워드] COVID-19 COVIDSeq Epidemiology pandemic SARS-CoV-2 [DOI] 10.1093/dnares/dsad020 PMC 바로가기 [Article Type] Resource Article: Genomes Explored
A comparison of high-throughput SARS-CoV-2 sequencing methods from nasopharyngeal samples비인두 샘플의 고처리량 SARS-CoV-2 시퀀싱 방법 비교Article Published on 2022-07-222022-09-11 Journal: Scientific Reports [Category] Coronavirus, COVID19(2023년), SARS, 변종, 유전자 메커니즘, 치료기술, 치료제, [키워드] absence acute respiratory syndrome coronavirus amplification applied approach caused coronavirus 2 Coverage COVID-19 pandemic COVIDSeq detect epidemiological genomic Genomic surveillance Healthcare system Healthcare systems infected individuals limitation multiplex nasopharyngeal sample Nasopharyngeal samples Nasopharyngeal swab nasopharyngeal swabs Next-generation sequencing pandemic of COVID-19 public health respiratory risk SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genome sequencing SARS-CoV-2 sequencing severe acute respiratory syndrome coronavirus 2 successive wave supply shortage Supply shortages Surveillance tested Transmissibility Treatment Vaccine variant variants virulence was obtained whole genome [DOI] 10.1038/s41598-022-16549-w PMC 바로가기 [Article Type] Article
SARS-CoV-2 Genomic Characteristics and Clinical Impact of SARS-CoV-2 Viral Diversity in Critically Ill COVID-19 Patients: A Prospective Multicenter Cohort Study중증 COVID-19 환자에서 SARS-CoV-2 게놈 특성 및 SARS-CoV-2 바이러스 다양성의 임상 영향: 전향적 다기관 코호트 연구Observational Study Published on 2022-07-132022-09-11 Journal: Viruses [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 임상, [키워드] Acute respiratory failure association clinical clinical outcomes COPD COVID-19 COVIDSeq Diversity Endpoint genetic diversity groups had more higher risk hospital ICU admission ICUs Ill Illumina Impact intensive care intensive care unit Mortality multicenter Next-generation sequencing not differ Observational cohort study Older other variant other variants Paris Patient Prospective Respiratory failure SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-COV-2 infection SARS-CoV-2 variant SARS-CoV-2 variants sequenced severe COVID-19 significantly SOFA score SOFA scores specific mutations Spread suggested the patient variant variant of concern variants were infected [DOI] 10.3390/v14071529 PMC 바로가기 [Article Type] Observational Study
Performance of COVIDSeq and Swift Normalase Amplicon SARS-CoV-2 Panels for SARS-CoV-2 Genome Sequencing: Practical Guide and Combining FASTQ StrategyArticle Published on 2022-04-202023-07-08 Journal: Journal of Clinical Microbiology [Category] COVID19(2023년), [키워드] clade COVID COVIDSeq Ct value Lineage SARS-CoV-2 Sequencing swift. [DOI] 10.1128/jcm.00025-22 PMC 바로가기
Prediction of SARS-CoV-2 Variant Lineages Using the S1-Encoding Region Sequence Obtained by PacBio Single-Molecule Real-Time SequencingArticle Published on 2021-12-182022-10-28 Journal: Viruses [Category] COVID-19, SARS, [키워드] acute respiratory syndrome amplification Bioscience clade coronavirus COVID-19 pandemic COVIDSeq E484K feasibility G142D Illumina Illumina sequencing Lineage molecule monoclonal antibody Mutation mutations N501Y Neutralizing outbreak PacBio SMRT sequencing prediction protocol Region reported S1 domain SARS-CoV-2 sequenced Sequencing the spike protein variant virus whole genome [DOI] 10.3390/v13122544 PMC 바로가기 [Article Type] Article
Initial Insights Into the Genetic Epidemiology of SARS-CoV-2 Isolates From Kerala Suggest Local Spread From Limited IntroductionsGenetics Published on 2021-03-172022-10-31 Journal: Frontiers in Genetics [Category] COVID-19, [키워드] A2a clade Affect affecting amplicon-based sequencing Analysis China Coronavirus disease 2019 country COVID-19 COVID-19 case COVIDSeq COVIDSeq protocol Efficacy Epidemiology FIVE functional variant Genetic Genetic epidemiology haplotype analysis India individuals insight isolate Kerala knowledge Limited Local mapped outbreak Patient primer binding site rapid increase RT-PCR S gene SARS-CoV-2 sequenced single-nucleotide Spread variant variants virus [DOI] 10.3389/fgene.2021.630542 PMC 바로가기 [Article Type] Genetics
High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencingCOVIDSeq 차세대 시퀀싱을 사용한 SARS-CoV-2의 고처리량 검출 및 유전 역학Research Article Published on 2021-02-172022-08-13 Journal: PLoS ONE [Category] MERS, 변종, 유전자 메커니즘, 치료기술, [키워드] added affecting Analysis approach approaches B.1.112 B.1.99 best clades clinical sample Concordance coronavirus disease Coronavirus disease 2019 COVID-19 COVIDSeq COVIDSeq approach COVIDSeq protocol detect Diagnosis duplicate duplicates Epidemiology Evolution flow cell Genetic Genetic epidemiology global pandemic in-depth analysis Inconclusive India individual knowledge Lineage Multiplex-PCR Next-generation sequencing NovaSeq 6000 nucleotide positive RT-PCR SARS-CoV-2 sensitivity sequenced Sequencing sequencing approach Single nucleotide variant Surveillance the SARS-CoV-2 unique variant [DOI] 10.1371/journal.pone.0247115 PMC 바로가기 [Article Type] Research Article