Reconstructing SARS-CoV-2 lineages from mixed wastewater sequencing dataArticle Published on 2024-08-312024-09-05 Journal: Scientific Reports [Category] update2024, [키워드] Genome informatics Next-generation sequencing SARS-CoV-2 Sequencing variant of concern Viral genetics wastewater [DOI] 10.1038/s41598-024-70416-4 PMC 바로가기 [Article Type] Article
A program for real-time surveillance of SARS-CoV-2 geneticsArticle Published on 2024-08-302024-09-05 Journal: Scientific Reports [Category] update2024, [키워드] Genome informatics Next-generation sequencing public health [DOI] 10.1038/s41598-024-70697-9 PMC 바로가기 [Article Type] Article
bacLIFE: a user-friendly computational workflow for genome analysis and prediction of lifestyle-associated genes in bacteriaArticle Published on 2024-03-072024-09-05 Journal: Nature Communications [Category] update2024, [키워드] Bacterial genetics Bacterial genomics Bacteriology Genome informatics Pathogens [DOI] 10.1038/s41467-024-46302-y PMC 바로가기 [Article Type] Article
New reference genomes to distinguish the sympatric malaria parasites, Plasmodium ovale curtisi and Plasmodium ovale wallikeriArticle Published on 2024-02-152024-09-05 Journal: Scientific Reports [Category] update2024, [키워드] Computational biology and bioinformatics Genome informatics [DOI] 10.1038/s41598-024-54382-5 PMC 바로가기 [Article Type] Article
An open-source, automated, and cost-effective platform for COVID-19 diagnosis and rapid portable genomic surveillance using nanopore sequencingarticle Published on 2023-11-212024-09-05 Journal: Burma Med J [Category] update2024, [키워드] Biological techniques Genome informatics Genomic analysis Infectious diseases Infectious-disease diagnostics Next-generation sequencing Pathogens viral infection [DOI] 10.1038/s41598-023-47190-w PMC 바로가기 [Article Type] article
De novo genome assembly depicts the immune genomic characteristics of cattlearticle Published on 2023-10-192024-09-05 Journal: Nature Communications [Category] update2024, [키워드] Functional genomics Genome informatics Immunogenetics Sequence annotation [DOI] 10.1038/s41467-023-42161-1 PMC 바로가기 [Article Type] article
Zoonotic origin of the human malaria parasite Plasmodium malariae from African apes인간 말라리아 기생충 플라스모디움 말라리아의 아프리카 유인원에서의 인수공통 기원Article Published on 2022-04-062024-08-01 Journal: Nature Communications [Category] 말라리아, [키워드] Genome informatics malaria Parasite evolution Parasite genomics [DOI] 10.1038/s41467-022-29306-4 PMC 바로가기
Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing인구 구조 분석 및 핵심 유전체 다중 위치 서열 분석을 통한 시겔라의 실험실 모니터링Article Published on 2022-01-272024-07-30 Journal: Nature Communications [Category] 세균성이질, [키워드] Bacterial genomics Genome informatics Phylogenomics Policy and public health in microbiology [DOI] 10.1038/s41467-022-28121-1 PMC 바로가기 [Article Type] Article
Template switching and duplications in SARS-CoV-2 genomes give rise to insertion variants that merit monitoringArticle Published on 2021-11-302022-10-31 Journal: Communications Biology [Category] COVID-19, SARS, [키워드] Affect Analysis antigenic B.1.1.7 B.1.351 B.1.617.2 consensus genome Course COVID-19 pandemic Deletion duplication Effect escaped Evidence furin site Genome informatics genomes higher infectivity identify insertion mechanism N-terminal domain Neutralizing antibodies new SARS-CoV-2 nucleotide substitution pandemic pathogenicity polymerase predicted Protein researcher SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 variants Sequencing subgenomic RNAs switching T-cell immunity Template the S protein the SARS-CoV-2 the Spike thought unique variant variants virulence virus [DOI] 10.1038/s42003-021-02858-9 PMC 바로가기 [Article Type] Article
Jumper enables discontinuous transcript assembly in coronaviruses점퍼는 코로나바이러스에서 불연속 전사 조립을 가능하게 합니다.Article Published on 2021-11-182022-09-10 Journal: Nature Communications [Category] MERS, SARS, 유전자 메커니즘, 치료제, [키워드] alignment analyses Analysis assembly canonical classical conditions coronavirus develop discontinuous transcription drug response eukaryote eukaryotes expressed expression Gene Expression Genome informatics identify JUMPER likelihood MERS-CoV Nidovirale Nidovirales outperform predict produced reveal RNA polymerase RNA splicing RNA-dependent RNA polymerase SARS-CoV-1 SARS-CoV-2 Software subsequent supported transcript transcriptional change Transcriptional changes Transcriptome transcriptomes transcripts Treatment Viral Viral RNA viral RNA-dependent RNA polymerase virus viruses [DOI] 10.1038/s41467-021-26944-y PMC 바로가기 [Article Type] Article