A novel deep learning framework for accurate melanoma diagnosis integrating imaging and genomic data for improved patient outcomesOriginal Article Published on 2024-06-162024-09-05 Journal: Skin research and technology : official journal of International Society [Category] update2024, [키워드] convolutional neural networks (CNNs) deep learning genomic data graph neural networks (GNNs) imaging data Melanoma multi‐modal data integration [DOI] 10.1111/srt.13770 PMC 바로가기 [Article Type] Original Article
Nucleocapsid single point-mutation associated with drop-out on RT-PCR assay for SARS-CoV-2 detectionarticle Published on 2023-10-232024-09-05 Journal: BMC Infectious Diseases [Category] update2024, [키워드] genomic data Molecular tests SARS-CoV-2 Vaccines Viral agent [DOI] 10.1186/s12879-023-08707-w PMC 바로가기 [Article Type] article
One health genomic surveillance and response to a university-based outbreak of the SARS-CoV-2 Delta AY.25 lineage, Arizona, 2021Article Published on 2022-10-312022-11-16 Journal: PLoS ONE [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] analyses clade Clinical data clone collected Community conducted contributed defined Delta Evidence facilitate Genome genomic genomic data Genomic surveillance Health identify infectious disease outbreak Lineage local public health Mutation new SARS-CoV-2 occurred one health outbreak Phylogenetic analysis positive provided public health RT-qPCR SARS-CoV-2 SARS-CoV-2 genome secondary transmission sequenced single mutation Spread spread of COVID-19 subsequent subset Surveillance targeted interventions the SARS-CoV-2 through contact variant variants was tested wastewater were used [DOI] 10.1371/journal.pone.0272830 PMC 바로가기
Systematic comparison of ranking aggregation methods for gene lists in experimental resultsArticle Published on 2022-10-312022-11-16 Journal: Bioinformatics [Category] COVID19(2023년), meta-analysis, SARS, [키워드] addition aggregation Algorithm Apoptosis automated Bacteria biological process Cancer Cell Characteristics code Consensus database dataset datasets disease downloaded Evaluating Features genomic data heterogeneity implementation implicated Inclusion information lack list of gene lung cancer Macrophage Meta-analysis noise level question reliability required resulting specific type Support the SARS-CoV-2 virus Variation was performed were used [DOI] 10.1093/bioinformatics/btac621 PMC 바로가기
Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in PennsylvaniaArticle Published on 2022-10-262022-11-16 Journal: mBio [Category] COVID19(2023년), SARS, 변종, [키워드] Alpha analyzed animal reservoir bat coronavirus COVID-19 epidemic creating deer Delta Delta variants Epidemics example future infection genomic data help Host Human humans identify independent Infection information Lineage mammals management Multiple nasal swab North America observation occur Odocoileus Odocoileus virginianus positive replicate reported reservoir RT-qPCR SARS-CoV-2 SARS-CoV-2 pandemic significantly spike gene susceptible trajectory Transmission transmissions variant vertebrates white-tail deer white-tailed deer whole genome sequence zoonosis [DOI] 10.1128/mbio.02101-22 PMC 바로가기
Healthcare-Associated COVID-19 across Five Pandemic Waves: Prediction Models and Genomic AnalysesArticle Published on 2022-10-182022-11-16 Journal: Viruses [Category] COVID19(2023년), SARS, 유전자 메커니즘, [키워드] addition analyses Analysis benefit BMI C-reactive protein Cluster cluster analysis Control COVID-19 CRP death ECDC European Factor frailty Genome sequencing genomic Genomic analysis genomic data HAI healthcare worker healthcare-associated COVID-19 Hospital-acquired infection identify Infection management Model Negative predictive value nosocomial outbreak NPV pandemic Patient performed Positive predictive value PPV predict prediction prediction modelling. ROC SARS-CoV-2 SARS-COV-2 infection significantly thrombocyte university hospital variable [DOI] 10.3390/v14102292 PMC 바로가기
Local monitoring of SARS-CoV-2 variants in two large California counties in 2021Article Published on 2022-10-112022-11-16 Journal: Scientific Reports [Category] COVID19(2023년), SARS, 변종, [키워드] acute respiratory syndrome Advarra Alpha variant analyzed approved carried caused changed changes in Cohort conducted confidence interval coronavirus COVID-19 Cycle threshold value Delta delta variant effort enrolled Enrollment Epidemiology genomic data Hispanic identify individual institutional review board Laboratory less Los Angele MONITOR Mutation nare nasal offered Older over participant Participants PCR polymerase chain positive Positive test Prevalence proportion public health resulting Sample SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 strain SARS-CoV-2 testing SARS-CoV-2 variant Sequencing sequencing data Spanish specimen specimens statistical study enrollment study period Surveillance swab specimen Symptom tested transported variant variants of concern women [DOI] 10.1038/s41598-022-21481-0 PMC 바로가기
A GPU-accelerated compute framework for pathogen genomic variant identification to aid genomic epidemiology of infectious disease: a malaria case study전염병의 게놈 역학을 지원하기 위한 병원체 게놈 변이체 식별을 위한 GPU 가속 컴퓨팅 프레임워크: 말라리아 사례 연구Article Published on 2022-09-202022-11-16 Journal: Briefings in Bioinformatics [Category] 말라리아, 변종, 유전자 메커니즘, [키워드] accelerated Accuracy COVID-19 pandemic dataset demonstrated disease Diseases effort epidemiological Epidemiology genomes genomic genomic data GPU malaria pathogen pathogen genomics Plasmodium falciparum malaria reduced reproducibility sequence SNPs Surveillance transmission pattern variant Variant calling whole-genome sequencing [DOI] 10.1093/bib/bbac314 PMC 바로가기
SARS-CoV-2 genomic surveillance as an evidence-based infection control approach in an offshore petroleum employee population근해 석유 직원 인구에서 증거 기반 감염 통제 접근 방식으로서의 SARS-CoV-2 게놈 감시Article Published on 2022-09-012022-09-11 Journal: American journal of infection control [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] Analysis approach can be used Cluster concerning contributed COVID-19 Efficacy epidemiological data Epidemiology evaluate genomic genomic data Genomic surveillance Gulf Gulf of Mexico Industrial Industrial hygiene Industrial hygienist infecting Infection infection control information International involved limit outbreak Outbreaks over PCR Phylogenetic analysis platform Population Positive test protocol quarantine reported SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 genomic surveillance sequenced serology Spread suggested Support Surveillance Symptom tested testing protocols transmissions variant viral strain Viral transmission was used WHO Whole genome sequencing [DOI] 10.1016/j.ajic.2022.05.008 PMC 바로가기 [Article Type] Article
Can machines learn the mutation signatures of SARS-CoV-2 and enable viral-genotype guided predictive prognosis?기계가 SARS-CoV-2의 돌연변이 신호를 학습하고 바이러스 유전자형 유도 예측 예후를 가능하게 할 수 있습니까?Article Published on 2022-08-152022-09-11 Journal: Journal of Molecular Biology [Category] COVID19(2023년), SARS, 변종, [키워드] accumulation added Additive age approach Can caution changes in clade cleaning Continuous driving epitope Epitopes Factor Features Genome genomes genomic data Genotype genotypic global healthcare hallmark HLA Implications Infection information Interaction life threatening machine machine learning machine-learning mutated Mutation Mutation identification mutations nucleotide Pathogens performed Predictive Predictive prognosis Prognosis representing SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2 variants severity Temporal Temporal benchmarking. Total variant variants Viral diseases virus [DOI] 10.1016/j.jmb.2022.167684 PMC 바로가기 [Article Type] Article