Epidemiología genómica de los sublinajes δ del virus SARS-CoV-2 de la segunda ola de COVID en Antioquia en el 2021Artículo Original Published on 2024-03-312024-09-05 Journal: Biomédica [Category] update2024, [키워드] árbol filogenético Epidemiología Epidemiology genomic sequencing mutación Mutation nucleotide sequence Phylogenetic tree public health surveillance SARS-CoV-2 secuencia nucleotídica secuenciación genómica Vigilancia en salud pública [DOI] 10.7705/biomedica.6862 PMC 바로가기 [Article Type] Artículo Original
Preparation a Recombinant Form of Pneumolysin Protein from Streptococcus pneumoniaearticle Published on 2023-04-302024-09-01 Journal: Bulletin of Experimental Biology and Medicine [Category] 폐렴구균 감염증, [키워드] Affinity chromatography nucleotide sequence recombinant pneumolysin Sequencing Streptococcus pneumoniae [Article Type] article
Design of Three Residues Peptides against SARS-CoV-2 InfectionArticle Published on 2022-09-222022-11-15 Journal: Viruses [Category] SARS, 치료제, [키워드] amino acid sequence analyzed Antiviral approach binding biochemical coronavirus COVID-19 pandemic cultured cell docking dose-dependent manner Effect Efficiency entry inhibitors erythrocyte Genome HCoV-OC43 human serum Infection inhibit inhibitor investigated molecular docking nucleotide nucleotide sequence Pathogens peptide peptides Prophylactic Proteases Protein SARS-CoV-2 Spike protein Spread suggested tested the Coronaviridae the RBD the Spike the synthetic peptide therapeutic Toxicity Treatment viral infection viral infections [DOI] 10.3390/v14102103 PMC 바로가기
Independent acquisition of short insertions at the RIR1 site in the spike N-terminal domain of the SARS-CoV-2 BA.2 lineageArticle Published on 2022-09-012022-11-16 Journal: Transboundary and emerging diseases [Category] SARS, 변종, [키워드] acquisition characterized community transmission COVID-19 case Denmark event functional genomic hotspot implication indels independent insertion Lineage lineages Mutation mutations N-terminal domain National Non-synonymous nucleotide sequence occurred omicron Prevalence reached responsible SARS-CoV-2 spike glycoprotein Spread Substitution the SARS-CoV-2 unique viral evolution [DOI] 10.1111/tbed.14672 PMC 바로가기
Genomic surveillance of SARS-CoV-2 by sequencing the RBD region using Sanger sequencing from North KeralaArticle Published on 2022-08-252022-11-16 Journal: Frontiers in Public Health [Category] SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] analyzed Community country Follow-up generate genomic Genomic surveillance gold standard hotspot Immune escape India Kerala lab management medium next generation sequencing NGS North nucleotide nucleotide sequence Patient processed Public health interventions RBD Receptor binding domain Region Research Sanger sequencing SARS-CoV-2 SARS-CoV-2 variant Sequencing severity spike gene spike gene sequencing. Surveillance the RBD turn variant variants of SARS-CoV-2 was done [DOI] 10.3389/fpubh.2022.974667 PMC 바로가기
Bioactive potentiality of secondary metabolites from endophytic bacteria against SARS-COV-2: An in-silico approachSARS-COV-2에 대한 내생 세균의 2차 대사 산물의 생리 활성 가능성: In-silico 접근Article Published on 2022-08-042022-09-11 Journal: PLoS ONE [Category] SARS, 치료기술, 치료제, [키워드] 3CLpro accelerate accession number aligned ammonia analyses Analysis analyzed antioxidant approach associations Bacillus Bacteria Bacterial biochemically chymotrypsin Chymotrypsin-like protease collected Compound computational tool coronavirus Culture docked docking scores drug-likeness effective enzyme flask culture flavonoid GenBank identify in silico analysis in-silico inhibitor Interaction isolate Lopinavir metabolite metabolites Micrococcus morphologically nine NMR nucleotide nucleotide sequence outcome performed phytohormone plant profiles protease protein-protein network protein-protein networks protocol Pseudomonas species rDNA reported Research Sanger sequencing Secondary Metabolite sequence similarity Staphylococcus structures submission target protein target proteins tested these compounds was performed were assessed [DOI] 10.1371/journal.pone.0269962 PMC 바로가기 [Article Type] Article
Phylogenetic analysis of human parainfluenza type 3 virus strains responsible for the outbreak during the COVID-19 pandemic in Seoul, South KoreaResearch article Published on 2022-08-012022-10-05 Journal: Journal of Clinical Virology [Category] 변종, [키워드] Acute respiratory infection aligned amino acid sequence analyses Analysis bootstrap C3a C3c cause Characteristics children circulating Cluster collected COVID-19 pandemic Emerging lineages Epidemic gene sequence Genetic Human Human Parainfluenza Virus 3 Infant Lineage molecular mutations nasopharyngeal swab specimen nucleotide sequence outbreak parainfluenza parainfluenza virus 3 Phylogenetic Phylogenetic analysis potential risk Protein ranged respiratory pathogen responsible Result South Korea specimens strain Substitution Support unique virus strain [DOI] 10.1016/j.jcv.2022.105213 [Article Type] Research article
Relative instantaneous reproduction number of Omicron SARS-CoV-2 variant with respect to the Delta variant in Denmark덴마크 Delta 변종에 대한 Omicron SARS-CoV-2 변종 상대적 순시 번식 수Article Published on 2022-05-012022-09-11 Journal: Journal of medical virology [Category] COVID19(2023년), SARS, 변종, [키워드] 95% CI 95% confidence interval acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 conditions coronavirus Delta delta variant Denmark dominant effective epidemiological Epidemiology Evolution expected GISAID database greater Infection instantaneous introduced less measure nucleotide nucleotide sequence omicron Omicron variant Omicron variants Preparing proportion rapid increase Registered relative Reproduction number SARS Coronavirus SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 infections SARS-CoV-2 variant severe acute respiratory syndrome Coronavirus Transmission variant variants virus widespread [DOI] 10.1002/jmv.27560 PMC 바로가기 [Article Type] Article
Ubiquitous Micro-Modular Homologies among Genomes from Viruses to Bacteria to Human Mitochondrial DNA: Platforms for Recombination during Evolution?바이러스에서 박테리아, 인간 미토콘드리아 DNA에 이르기까지 게놈 간의 유비쿼터스 마이크로 모듈식 상동성: 진화 중 재조합을 위한 플랫폼?Article Published on 2022-04-242022-09-11 Journal: Viruses [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] acute respiratory syndrome annealing appear Bacterial Biology Cluster coding comparison computer Control DNA DNA sequence domain Escherichia Escherichia coli Evolution four letter genetic encoding system Genetic Genome genome segment genomes Human identity investigated mechanism micro-modular identities in 1000 randomized SARS-CoV-2 genomes micro-modular sequence identities mitochondrial mitochondrial DNA nucleotide nucleotide sequence nucleotides Numerous patch type sequence similarities platform question raised Randomized Randomly Recombination respiratory SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 RNA SARS-CoV-2 RNA compared to genomes of many viruses, protobacteria, Escherichia coli SARS-CoV-2 sequence sequence sequence identity Severe acute respiratory syndrome severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus-2 signals for evolution, annealing and integrative recombination the 4,641,652 nt DNA sequence of Escherichia coli K12. variant variants viruses Wuhan [DOI] 10.3390/v14050885 PMC 바로가기 [Article Type] Article
SARS-CoV-2 host prediction based on virus-host genetic features바이러스 숙주 유전적 특징을 기반으로 한 SARS-CoV-2 숙주 예측Article Published on 2022-03-172022-09-11 Journal: Scientific Reports [Category] SARS, 유전자 메커니즘, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 approach bat bats Characteristics clinical manifestations codon Codons coronavirus different cell different cells Diseases dispersion feature Frequency Genetic genetic diversity Host host specificity hosts Human infect infecting Infection information involved molecular mechanism molecular mechanisms nucleotide nucleotide sequence Organisms pandemic Recognition relative SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 pandemic searched sequence sequences severe acute respiratory syndrome Coronavirus specificity suggested the SARS-CoV-2 Usage variable viral genome Viral transmission Wuhan Wuhan, China [DOI] 10.1038/s41598-022-08350-6 PMC 바로가기 [Article Type] Article