Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic초기 SARS-CoV-2 대유행을 이해하고 퇴치하기 위한 계통발생 및 계통역학적 접근Review Published on 2022-09-012022-09-11 Journal: Nature reviews. Genetics [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 applied approach combating coronavirus Determining effective epidemiological Genetic changes identify Infection International movement outbreak pandemic phylodynamic Phylogenetic phylogenies Prevalence provided public health SARS-CoV-2 SARS-CoV-2 transmission severe acute respiratory syndrome Coronavirus Spread the early SARS-CoV-2 Transmissibility Transmission variant virus [DOI] 10.1038/s41576-022-00483-8 PMC 바로가기 [Article Type] Review
New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread간격별 분산 역학을 통합한 새로운 계통 발생 모델은 질병 확산의 추론을 향상시킵니다.Article Published on 2022-08-032022-09-11 Journal: Molecular Biology and Evolution [Category] SARS, 유전자 메커니즘, [키워드] Alter average biogeographic history contrary COVID-19 COVID-19 pandemic dataset datasets develop dispersal Dynamics early phase Efficacy Epidemiology event Evidence failure IMPROVE Inference Interpretation Intervention measure mitigate Model New pandemic parameter phylodynamic phylodynamic models phylogeography provide SARS-CoV-2 significantly Simulation Spread Statistics temporal dynamics Variation [DOI] 10.1093/molbev/msac159 PMC 바로가기 [Article Type] Article
Phylogenetic analysis and comparative genomics of SARS-CoV-2 from survivor and non-survivor COVID-19 patients in Cordoba, Argentina아르헨티나 코르도바에서 생존자와 비생존자 COVID-19 환자의 SARS-CoV-2 계통발생 분석 및 비교 유전체학Article Published on 2022-07-142022-09-11 Journal: BMC Genomics [Category] COVID19(2023년), MERS, SARS, 변종, 유전자 메커니즘, 진단, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Analysis association B.1 both groups carried Clinical characteristics Clinical outcome clinical outcomes Comorbidities Comorbidity Comparative Comparative genomics Complete Córdoba coronavirus cough COVID-19 COVID-19 disease COVID-19 pandemic COVID-19 patient COVID-19 patients Dyspnea Epidemiological study Evolution Evolution of SARS-CoV-2 Fever First wave functional Future Genes genome sequence Genome sequences genomes Genomic analysis genomic data groups Hospitalization in both groups incidence Infectious diseases Lineage majority Molecular epidemiology Mutation nasopharyngeal specimen Next-generation sequencing nine non-survivor Non-survivors Nsp3 outcomes pandemic Patient patients performed phylodynamic Prevalence Protein repertoire Research respiratory responsible SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 mutation SARS-CoV-2 pathogenesis SARS-CoV-2 strain SARS-CoV-2 strains SARS-CoV-2 variants SARS-CoV-2 virus Sequencing severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus 2 South America Specific specific mutation specific mutations Spike protein Spread survivor Survivors Symptom Symptoms the SARS-CoV-2 the Spike variant Variation was performed [DOI] 10.1186/s12864-022-08756-6 PMC 바로가기 [Article Type] Article
Early introduction, dispersal and evolution of Delta SARS-CoV-2 in Southern Brazil, late predominance of AY.99.2 and AY.101 related lineages남부 브라질에서 Delta SARS-CoV-2의 조기 도입, 확산 및 진화, AY.99.2 및 AY.101 관련 계통의 늦은 우세Article Published on 2022-04-022022-09-11 Journal: Virus research [Category] COVID19(2023년), SARS, 변종, [키워드] America Americas Analysis AY.101 AY.99.2 B.1.617.2 Brazil concern consolidation COVID-19 Delta delta variant dispersal Evolution feature FIVE Gamma genomic Lineage majority Mutation mutational rate pandemic performed Performing phylodynamic Phylogenetic Phylogenetic tree presenting provided replaced replacing reported responsible Rio Grande SARS-CoV-2 sequence sequences Southern Brazil. state Substitution Surveillance variant variants VoC whole-genome sequencing widespread [DOI] 10.1016/j.virusres.2022.198702 PMC 바로가기 [Article Type] Article
Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands네덜란드의 양식 밍크 및 관련 인간에서 SARS-CoV-2의 적응, 확산 및 전파Article Published on 2021-11-232022-09-10 Journal: Nature Communications [Category] MERS, SARS, 진단, 치료기술, [키워드] adaptation Amino acid amino acid substitution Analysis Bayesian Cluster Community COVID-19 pandemic dispersal distance epidemiological Epidemiology Evidence evidence of faster First wave FIVE genetic information genomic sequencing highlight Human Infection information initial mink molecular evolution movement Netherland Netherlands outbreak pandemic Pathogens phylodynamic predictor Protein provide Receptor binding domain SARS-CoV-2 SARS-CoV-2 transmission sequence Spike protein Spread statistically significant subsequent the Spike Transmission transmission of SARS-CoV-2 viral epidemiology virus viruses was performed [DOI] 10.1038/s41467-021-27096-9 PMC 바로가기 [Article Type] Article
Multiple introductions of SARS-CoV-2 B.1.1.214 lineages from mainland Japan preceded the third wave of the COVID-19 epidemic in HokkaidoResearch article Published on 2021-11-012022-10-05 Journal: Travel medicine and infectious disease [Category] SARS, 변종, 유전자 메커니즘, [키워드] Air travel Analysis analyzed Area conducted contributed COVID-19 epidemic database eight genome sequence GISAID highest Human migration International introduced Japan Japanese Lineage Multiple Mutation occurred phylodynamic phylodynamics Result SARS-CoV-2 SARS-CoV-2 genome sequence the SARS-CoV-2 genome Tokyo Travel Travel medicine [DOI] 10.1016/j.tmaid.2021.102210 [Article Type] Research article
A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada캐나다 퀘벡에서 SARS-CoV-2의 광범위한 전파를 뿌린 소수의 초기 도입Research Published on 2021-10-282022-09-10 Journal: Genome Medicine [Category] MERS, SARS, 유전자 메커니즘, [키워드] absence Americas Analysis Canada Combined coronavirus COVID-19 death Effectiveness Effects epidemiological data Epidemiology Europe event events First wave generate Genome genomic identify impacted independent infections introduced investigated Lineage majority mandatory measure Measures pandemic phylodynamic Phylogenetic public health measures quarantine quarantine measures reduced Result SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes sequence sequenced Sequencing spatiotemporal Spread Spring Break supplementary material Transmission transmission of SARS-CoV-2 Travel Viral virus while widespread [DOI] 10.1186/s13073-021-00986-9 PMC 바로가기 [Article Type] Research
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020SARS-CoV-2 게놈의 빠른 발병률 추정은 2020년 여름 동안 유럽에서 사례 감지가 감소했음을 보여줍니다Article Published on 2021-10-142022-09-10 Journal: Nature Communications [Category] MERS, SARS, 변종, 치료기술, [키워드] Affect analyses case ascertainment complement Data processing Denmark diagnose diagnostic Effect effort Epidemiology Europe facilitate hidden highest incidence Infection liberal minutes MONITOR outbreak pandemic phylodynamic Phylogeny Population genetics profile proportion Rapid reported reveal SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 pandemic sequence Sequencing Stochastic modelling summer Surveillance Switzerland the SARS-CoV-2 Victoria Viral viral genomes [DOI] 10.1038/s41467-021-26267-y PMC 바로가기 [Article Type] Article
Temporal spread and evolution of SARS‐CoV‐2 in the second pandemic wave in BrazilResearch Article Published on 2021-10-082022-10-04 Journal: Journal of medical virology [Category] MERS, SARS, 변종, 치료기술, [키워드] acute respiratory syndrome amino acid substitution Analysis Bayesian approach Brazil concerning coronavirus disease country deaths demonstrated dissemination evaluated Evolution faster Frequency Gamma growth highlighting information Lineage Mutation North novel lineage nucleotide occurred P.1 P.2 pandemic phylodynamic Prevalence public health raised Region regions SARS Coronavirus SARS‐CoV‐2 SARS‑CoV2 sequence Skyline slight rise South America Spread statistically Temporal the spike protein These data variant WGS [DOI] 10.1002/jmv.27371 PMC 바로가기 [Article Type] Research Article
Decomposing the sources of SARS-CoV-2 fitness variation in the United StatesResearch Article Published on 2021-09-022022-10-28 Journal: Virus Evolution [Category] COVID-19, [키워드] Amino acid Analysis B.1.1.7 B.1.427 B.1.429 B.1.526 birth-death model building Determining develop Effect explained extrinsic Factor Genetic Genetic variant Genetic variation genetics genomic region growth rate heterogeneity Host hosts indicate intrinsic less Lineage Mutation pathogen phenotype phylodynamic phylodynamics phylogenies regions SARS-CoV-2 significantly spike starting Structural variant the SARS-CoV-2 genome the United State Transmission dynamics transmission fitness transmission potential transmission rate transmission rates variant Variation [DOI] 10.1093/ve/veab073 PMC 바로가기 [Article Type] Research Article