New insight in molecular detection of Mycobacterium tuberculosisMini-Review Published on 2024-06-212024-09-05 Journal: AMB Express [Category] update2024, [키워드] molecular assays Molecular diagnosis MTB Mycobacterium tuberculosis PCR SNPs TB Tuberculosis [DOI] 10.1186/s13568-024-01730-3 PMC 바로가기 [Article Type] Mini-Review
vSNP: a SNP pipeline for the generation of transparent SNP matrices and phylogenetic trees from whole genome sequencing data setsSoftware Published on 2024-06-012024-09-05 Journal: BMC Genomics [Category] update2024, [키워드] bioinformatics Sequencing SNPs [DOI] 10.1186/s12864-024-10437-5 PMC 바로가기 [Article Type] Software
Molecular markers for malaria genetic epidemiology: progress and pitfallsarticle Published on 2024-02-282024-09-01 Journal: Trends in Parasitology [Category] 말라리아, [키워드] antigen genes genotyping malaria molecular surveillance Microsatellites molecular markers SNPs [Article Type] article
Analysis of genetic biomarkers, polymorphisms in ADME-related genes and their impact on pharmacotherapy for prostate cancerarticle Published on 2023-10-192024-09-05 Journal: Cancer Cell International [Category] update2024, [키워드] Androgen metabolism Biomarkers Genetic polymorphism pharmacotherapy Prostate cancer SNPs [DOI] 10.1186/s12935-023-03084-5 PMC 바로가기 [Article Type] article
Effect of mRNA/tRNA mutations on translation speed: Implications for human diseasesarticle Published on 2023-07-242024-09-05 Journal: Brain stimulation [Category] update2024, [키워드] codon mRNA mRNA translation pathogenic mutations SNPs tRNA tRNA abundance [DOI] 10.1016/j.jbc.2023.105089 PMC 바로가기 [Article Type] article
Angiotensin-converting enzyme 2 (ACE2) polymorphisms and susceptibility of severe SARS-CoV-2 in a subset of Pakistani populationarticle Published on 2023-06-122024-09-05 Journal: Virology Journal [Category] update2024, [키워드] ACE2 Polymorphisms rs2285666 SARS-CoV-2 SNPs variants [DOI] 10.1186/s12985-023-02091-2 PMC 바로가기 [Article Type] article
Toll- like receptor 2 polymorphism and IL-6 profile in relation to disease progression in chronic HBV infection: a case control study in Egyptian patientsArticle Published on 2023-02-012023-06-13 Journal: Clinical and experimental medicine [Category] B형 간염, [키워드] HBV IL-6 SNPs TLR-2. [DOI] 10.1007/s10238-022-00792-6 PMC 바로가기
HBD-2 variants and SARS-CoV-2: New insights into inter-individual susceptibilityArticle Published on 2022-12-092023-07-11 Journal: Frontiers in Immunology [Category] COVID19(2023년), [키워드] antimicrobial peptides COVID-19 hBD-2 molecular dynamics SNPs [DOI] 10.3389/fimmu.2022.1008463 PMC 바로가기
Bioinformatics pipeline unveils genetic variability to synthetic vaccine design for Indian SARS-CoV-2 genomesArticle Published on 2022-11-012022-11-15 Journal: International immunopharmacology [Category] SARS, 치료기술, 치료제, [키워드] aligned amino acid change antigenic antigenic epitopes B-cell epitope bioinformatics bioinformatics pipeline can be used clade clades conserved conserved regions criteria epitope Evolution genetic variability genomic HLA allele identify immunogenic MAFFT MHC-I MHC-II Multiple sequence alignment Mutation Nextstrain Non-synonymous Non-Synonymous Signature SNP performed Phylogenetic analysis primer probe Protein Region regions reported resulting SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 pandemic selected SNP SNPs T-cell T-cell epitope T-cell epitopes unique Vaccine Vaccine design virus virus detection virus genome [DOI] 10.1016/j.intimp.2022.109224 PMC 바로가기
Evidence of co-infections during Delta and Omicron SARS-CoV-2 variants co-circulation through prospective screening and sequencingArticle Published on 2022-11-012022-11-15 Journal: Clinical microbiology and infection : the official [Category] COVID19(2023년), SARS, 변종, 치료기술, 치료제, [키워드] Analysis chimeric circulation Co-infection collected COVID-19 Delta Delta and Omicron VOC Epidemic epidemiologically evidence of France generate Genetic Health Infection K417N L452R Mutation nasopharyngeal sample omicron Pandemics pathogenic patients PCR assay polymorphism primer sets profile Recombination recombination event Respiratory samples S-gene mutation Sample SARS-CoV-2 SARS-CoV-2 co-infection SARS-CoV-2 genome SARS-CoV-2 variant screened sequence Sequencing single nucleotide Single nucleotide polymorphism Single nucleotide polymorphism screening SNP SNPs submitted Surveillance variant virus VoC was performed WGS whole genome Whole genome sequencing [DOI] 10.1016/j.cmi.2022.06.030 PMC 바로가기