Impact of the COVID-19 pandemic on the prevalence of influenza A and respiratory syncytial viruses elucidated by wastewater-based epidemiologyArticle Published on 2023-03-082024-09-05 Journal: The Science of the total environment [Category] update2024, [키워드] COVID-19 influenza A virus RSV typing Wastewater banking Wastewater-based epidemiology [DOI] 10.1016/j.scitotenv.2023.162694 PMC 바로가기 [Article Type] Article
A Hierarchical Genotyping Framework Using DNA Melting Temperatures Applied to Adenovirus Species Typing아데노바이러스 종 타이핑에 적용된 DNA 녹는 온도를 사용한 계층적 유전형 분석 프레임워크Article Published on 2022-05-132022-09-11 Journal: International Journal of Molecular Sciences [Category] 치료기술, [키워드] Accuracy Adenovirus applied Bayesian BioFire bioMérieux circulation clinician conjunction COVID-19 pandemic dataset demonstrated diagnostic system diagnostic tests DNA DNA melting curve analysis Epidemiology framework Genetic variation genotyping Hierarchical Increased information knowledge less melting melting curve analysis molecular MONITOR observé Outbreaks pathogen identification Patient PCR predicted Prevalence public health sequence information species Specy Surveillance typing [DOI] 10.3390/ijms23105441 PMC 바로가기 [Article Type] Article
Improved Subtyping of Avian Influenza Viruses Using an RT-qPCR-Based Low Density Array: ‘Riems Influenza a Typing Array’, Version 2 (RITA-2)Article Published on 2022-02-172022-10-28 Journal: Viruses [Category] Coronavirus, [키워드] addition Appropriate Avian Influenza clinical samples cross-reactions Decoupling density detect Diagnosis diagnostic Hoffmann Host IBV Improved infections Infectious Bronchitis Virus influenza A virus introduced isolates newcastle disease virus nine outbreak provide Reactions real-time RT-PCR reduced RT-PCR RT-qPCR selected sequence shown subtype typing variant Version virus Volume [DOI] 10.3390/v14020415 PMC 바로가기 [Article Type] Article
Establishment of a Rapid Typing Method for Coronavirus Disease 2019 Mutant Strains Based on PARMS TechnologyArticle Published on 2022-01-182022-10-30 Journal: Micromachines [Category] COVID-19, [키워드] Accuracy acute respiratory syndrome amplification cDNA coronavirus COVID-19 COVID-19 epidemic delta variant detect Detection limit double-blind E484K effective K417N L452R Mutation N501Y PCR polymerase chain primer Rapid rapid typing Result reverse transcribed SARS-CoV-2 sensitivity specificity specimens strain technology transfer typing universal primer variant variant of concern virus VoC VOCs [DOI] 10.3390/mi13020145 PMC 바로가기 [Article Type] Article
Typing of alpha and beta coronaviruses by DNA barcoding of NSP12 geneResearch Article Published on 2022-01-112022-10-04 Journal: Journal of medical virology [Category] COVID19(2023년), MERS, SARS, 변종, [키워드] 229E acute respiratory syndrome Alpha Amplicon sequencing amplification amplify applied bat beta coronavirus coding sequence conserved coronavirus Coronaviruses CoV COVID‐19 CoVs DNA DNA bar code Evolution facilitate Host hosts human CoV in silico indicated involved lab Lineage mammal MERS Molecular typing mutant NL63 nucleotide sequence OC43 pandemic pathogenicity Phylogenetic tree resulting SARS‐CoV‐2 sequence Spread taxonomy Transmission typing universal primer variant [DOI] 10.1002/jmv.27550 PMC 바로가기 [Article Type] Research Article
A Novel High-Throughput Nanopore-Sequencing-Based Strategy for Rapid and Automated S-Protein Typing of SARS-CoV-2 VariantsCommunication Published on 2021-12-192022-10-28 Journal: Viruses [Category] COVID-19, SARS, [키워드] Amino acid amplification amplify Analysis approaches automated bioinformatics bottleneck diagnostic flow cell identify Immune escape immunodominant molecular Mutation Nanopore Next-generation sequencing novel offer primer primer pair protocol Rapid reduced region of interest required respiratory specimen restriction S-gene S-protein S-protein variant SARS-CoV-2 SARS-CoV-2 variant sequence sequenced sample Sequencing Strategy subsequent Surveillance typing vaccine escape validation variant variants VoC whole-genome whole-genome sequencing [DOI] 10.3390/v13122548 PMC 바로가기 [Article Type] Communication
Exploring the diversity of coronavirus in sewage during COVID-19 pandemic: Don’t miss the forest for the treesCOVID-19 전염병 동안 하수에서 코로나바이러스의 다양성 탐구: 나무를 위한 숲을 놓치지 마세요Article Published on 2021-12-152022-09-11 Journal: The Science of the total environment [Category] SARS, 유전자 메커니즘, 치료기술, 치료제, [키워드] analyzed animal coronavirus Animal host applied approach Characteristics circulation clinical samples contig Coronaviridae Coronaviridae family coronavirus CoV COVID-19 COVID-19 pandemic CoVs detect enrichment Genetic HCoV HCoV-OC43 infecting next generation sequencing NGS OC43 Occurrence pandemic protocol rodents SARS-CoV-2 sequenced Sequencing sewage Sewage virome specimen target Target enrichment sequencing typing Viral metagenomics. virus wake was obtained wastewater [DOI] 10.1016/j.scitotenv.2021.149562 PMC 바로가기 [Article Type] Article
Re-emergence of enterovirus D68 in Europe after easing the COVID-19 lockdown, September 2021Rapid Communication Published on 2021-11-112022-10-31 Journal: Eurosurveillance [Category] Coronavirus, MERS, SARS, [키워드] acute flaccid myelitis COVID-19 diagnostic eight enterovirus Enterovirus D68 Europe European country expected infections lockdown MOST rapid increase reinforcement reported respiratory infection stimulated Surveillance typing widespread [DOI] 10.2807/1560-7917.ES.2021.26.45.2100998 PMC 바로가기 [Article Type] Rapid Communication
A one-step real-time RT-PCR assay for simultaneous typing of SARS-CoV-2 mutations associated with the E484K and N501Y spike protein amino-acid substitutionsE484K 및 N501Y 스파이크 단백질 아미노산 치환과 관련된 SARS-CoV-2 돌연변이의 동시 타이핑을 위한 1단계 실시간 RT-PCR 분석Article Published on 2021-10-012022-09-11 Journal: Journal of virological methods [Category] SARS, 변종, 치료기술, 치료제, [키워드] amino-acid amplification animals detect E484K Efficiency explained facilitate Human identify Immune escape linear log methodology Mutation mutation of concern N501Y negative sample nucleic acid probe real-time RT-PCR resulting RT-PCR assay S protein SARS-CoV-2 SARS-CoV-2 mutation SARS-CoV-2 mutations spike Spike protein strain Strains Substitution substitutions TaqMan the S protein Transmissibility typing validation wild type [DOI] 10.1016/j.jviromet.2021.114242 PMC 바로가기 [Article Type] Article
The first epidemiological and virological influenza surveillance in the Republic of Guinea revealed the predominance of influenza A/H3N2 and B Victoria virusesOriginal Paper Published on 2021-09-282023-06-08 Journal: Epidemiology and Infection [Category] 신종인플루엔자, [키워드] A/H3N2 B/Victoria Guinea Influenza Surveillance typing [DOI] 10.1017/S0950268821001965 PMC 바로가기 [Article Type] Original Paper