Ten-Week Follow-Up of Monkeypox Case-Patient, Sweden, 2022Article Published on 2022-10-012023-06-09 Journal: Emerging Infectious Diseases [Category] Fulltext, 원숭이두창, [키워드] Epidemic metagenomic sequencing Monkeypox orthopoxvirus outbreak Sweden viruses zoonoses [DOI] 10.3201/eid2810.221107 PMC 바로가기
Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 GenomesArticle Published on 2022-09-012022-11-15 Journal: The Journal of molecular diagnostics : JMD [Category] COVID19(2023년), SARS, 변종, 진단, 치료기술, [키워드] acute respiratory syndrome allele frequency Amplicon bases Bioscience clade clinical clinical utility consensus sequence coronavirus coronavirus 2 criteria evaluated Evolution expected Genome genome coverage identity infection control limit of detection median metagenomic sequencing outbreak Panel PCR-negative performance performed positive R 2 respiratory respiratory virus Sanger sequencing SARS-CoV-2 sensitive sequence sequencing method specimen specimens spike gene Transmission variant whole-genome [DOI] 10.1016/j.jmoldx.2022.05.007 PMC 바로가기
A metagenomic DNA sequencing assay that is robust against environmental DNA contamination환경 DNA 오염에 강한 메타게놈 DNA 시퀀싱 분석Article Published on 2022-07-212022-09-11 Journal: Nature Communications [Category] 유전자 메커니즘, 진단, 치료기술, 치료법, [키워드] applied Blood Co-infection Contamination COVID-19 DNA DNA sequencing identify Infection Inflammatory bowel disease introduced Isolation lAbel metagenomic metagenomic sequencing microbial Microbial communities microbial community Microbiome microorganism microorganisms powerful tool recorded robust Sepsis Sequencing SIFT Tagging Urine [DOI] 10.1038/s41467-022-31654-0 PMC 바로가기 [Article Type] Article
Longitudinal alterations of the gut mycobiota and microbiota on COVID-19 severityCOVID-19 중증도에 따른 장내 세균총 및 미생물총의 종단적 변화Article Published on 2022-06-242022-09-11 Journal: BMC Infectious Diseases [Category] COVID19(2023년), SARS, 치료기술, [키워드] abundance alteration analyzed Bacterial Bacteroides Candida Candida albicans characteristic characterized Community comparable condition correlation COVID-19 COVID-19 patient COVID-19 patients COVID-19 severity decrease discharge Enterococcus Faecalibacterium Follow-up fungal group groups Gut healthy healthy individual in some increase in lactobacillus longitudinal Lower metagenomic sequencing microbial microbiota Mild mild cases mild patients MONITOR Mycobiota Mycobiota. no difference no differences Patient patients with COVID-19 positively correlated remained SARS-COV-2 infection severe cases severe COVID-19 severe group severe patients the healthy [DOI] 10.1186/s12879-022-07358-7 PMC 바로가기 [Article Type] Article
Gut microbiota composition is associated with SARS-CoV-2 vaccine immunogenicity and adverse events장내 미생물 조성은 SARS-CoV-2 백신 면역원성 및 부작용과 관련이 있습니다.Observational Study Published on 2022-06-012022-09-12 Journal: Gut [Category] COVID19(2023년), MERS, SARS, 임상, 진단, [키워드] adverse event Anti-inflammatory antibody association Bacteria Bacterial baseline Bifidobacterium BNT162b2 BNT162b2 vaccine carbohydrate collected complement conducted CoronaVac COVID-19 COVID-19 vaccinee COVID-19 vaccines Effectiveness enteric bacterial microflora flagella Gut gut microbiota gut microbiota composition high neutralising antibody Host immune response IgG ELISA immune response Inactivated vaccine individual Intervention Linear Discriminant Analysis marker metabolism metagenomic sequencing Microbiome microbiota modulating mRNA vaccine pathway performed positive correlation Prevotella recipient reduced SARS-CoV-2 SARS-CoV-2 vaccine second dose significantly lower Sinovac spike receptor-binding domain Stool subject the vaccine vaccination Vaccine vaccinee vaccinees Virus neutralisation were measured [DOI] 10.1136/gutjnl-2021-326563 PMC 바로가기 [Article Type] Observational Study
Molecular diagnostics and next-generation sequencing reveal real etiological characteristics of invasive Salmonella infection in febrile illness in Freetown, Sierra Leone분자 진단 및 차세대 염기서열 분석은 시에라리온 프리타운의 발열 질환에서 침습성 살모넬라 감염의 실제 병인학적 특성을 밝혀냅니다.Article Published on 2022-05-232024-07-29 Journal: Emerging Microbes & Infections [Category] 살모넬라증, [키워드] blood culture invasive non-typhoidal metagenomic sequencing Next-generation sequencing typhoid fever Widal test [DOI] 10.1080/22221751.2022.2076612 PMC 바로가기
Infection prevention and control insights from a decade of pathogen whole-genome sequencing10년 간의 병원체 전체 게놈 시퀀싱을 통한 감염 예방 및 제어 통찰력Review Published on 2022-04-012022-09-11 Journal: The Journal of hospital infection [Category] COVID19(2023년), SARS, 변종, [키워드] antimicrobial resistance arising Attention Benchmarking Candida Clostridioide Clostridioides Community COVID-19 pandemic Culture Diagnosis Diseases Epidemiology explain greater group healthcare worker Healthcare workers heterogeneity hospital identify implication individual Infection infection control Infection prevention infections Infectious diseases involved metagenomic sequencing Mycobacterium outbreak pathogen Pathogens Patient Prevent Prevention and control provided SARS-CoV-2 sequencing Sequencing Staphylococcus aureus subtype Surveillance thought Transmission transmission route Transmission routes variant variants whole-genome sequencing [DOI] 10.1016/j.jhin.2022.01.024 PMC 바로가기 [Article Type] Review
Metagenomic Sequencing and Reverse Transcriptase PCR Reveal That Mobile Phones and Environmental Surfaces Are Reservoirs of Multidrug-Resistant Superbugs and SARS-CoV-2Metagenomic Sequencing 및 Reverse Transcriptase PCR, 휴대전화와 환경 표면이 다제내성 슈퍼버그 및 SARS-CoV-2의 저장소임을 밝혀내다Article Published on 2022-03-082022-09-11 Journal: Frontiers in Cellular and Infection Microbiology [Category] SARS, 치료기술, [키워드] Acinetobacter aggregation Analysis antimicrobial resistance Aspergillus Bacterial bacteriophages Care carried Combination Community conducted Contamination COVID-19 COVID-19 patients Culture dissemination drug-resistant Emergency fomites fungi HCW HCWs healthcare worker Healthcare workers hospital Malassezia metagenomic metagenomic sequencing methicillin methicillin-resistant Staphylococcus aureus microbe microbes microbial Mobile mobile phone mobile phones molecular motility non-COVID-19 patient Non-COVID-19 patients P. aeruginosa pathogen pathogenic Patient PCR phenotypic point prevalence positive predominant preponderance Prevalence Pseudomonas Pseudomonas aeruginosa reservoir resistance gene risk RT-PCR SARS-CoV-2 SARS-CoV-2 detection Sequencing shotgun shotgun metagenomics. Staphylococcus Staphylococcus aureus Staphylococcus epidermidis surface Swab swabs transfer virulent zone [DOI] 10.3389/fcimb.2022.806077 PMC 바로가기 [Article Type] Article
Gut microbiota dynamics in a prospective cohort of patients with post-acute COVID-19 syndrome급성 COVID-19 증후군 환자의 전향적 코호트에서 장내 미생물 역학Multicenter Study Published on 2022-03-012022-09-11 Journal: Gut [Category] SARS, 유전자 메커니즘, [키워드] Actinomyce Actinomyces Admission alteration analysed Bacteria Bacteroide Bifidobacterium Butyrate clearance Clostridium comparable Complication complications of COVID-19 conducted controls correlated COVID-19 COVID-19 severity defined Evidence evidence of facilitate Faecalibacterium fatigue Gut gut microbiome gut microbiome composition gut microbiota composition Hair loss intestinal INTESTINAL MICROBIOLOGY inverse correlation memory metagenomic sequencing Microbiome microbiota modulation Neuropsychiatric Non-COVID-19 nosocomial Occurrence Pathogens Patient persistent poor memory prospective cohort Prospective Study provided respiratory symptom SARS-CoV-2 virus shotgun Spectrum Symptom syndrome the SARS-CoV-2 virus viral clearance [DOI] 10.1136/gutjnl-2021-325989 PMC 바로가기 [Article Type] Multicenter Study
Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China코로나19 이전 중국 우한에서 발생한 호흡기 감염의 총 감염체 특성Research Article Published on 2022-02-172022-09-10 Journal: PLoS Pathogens [Category] COVID19(2023년), MERS, SARS, 유전자 메커니즘, [키워드] Acute respiratory infection acute respiratory infections Analysis approaches Atypical Atypical pneumonia average Bacteria Bronchoalveolar lavage fluid causative agent Chlamydia Co-infection collected complex COVID-19 DNA viruses Evidence focus fungi global pandemic healthy controls highlighting human diseases Influenza influenza viruses less metagenomic sequencing Novel coronavirus outbreak pathogen Pathogens Patient PCR phylogenetic analyses Pneumonia presenting provide public health qPCR related virus respiratory Respiratory disease respiratory infection respiratory infections respiratory pathogen Respiratory pathogens respiratory sample respiratory virus rhinovirus rhinoviruses RNA viruses Sample SARS-CoV-2 Sequencing single hospital These data Total total RNA Transmission viruses was performed Wuhan Wuhan, China zoonotic [DOI] 10.1371/journal.ppat.1010259 PMC 바로가기 [Article Type] Research Article