Temporal and geographic spreading of hepatitis B virus genotype A (HBV-A) in Brazil and the AmericasArticle Published on 2021-08-012023-06-12 Journal: Journal of viral hepatitis [Category] B형 간염, [키워드] genetic diversity Hepatitis B virus Molecular epidemiology phylodynamic phylogeography [DOI] 10.1111/jvh.13527
Genomic Surveillance and Phylodynamic Analyses Reveal the Emergence of Novel Mutations and Co-mutation Patterns Within SARS-CoV-2 Variants Prevalent in IndiaMicrobiology Published on 2021-07-292022-10-31 Journal: Frontiers in Microbiology [Category] COVID-19, [키워드] Analysis association clade collected country Course COVID-19 COVID-19 patient Critical emergence Evolution Genome sequencing genomic GISAID database identification India Infection Kolkata manifested Mutation mutation – genetics novel outcome overlap patients pattern performed phylodynamic Phylodynamic analyses prevalent profile SARS-CoV-2 SARS-CoV-2 variant SARS-CoV-2 variants sequence specific mutation Spread variant West whole-genome sequencing [DOI] 10.3389/fmicb.2021.703933 PMC 바로가기 [Article Type] Microbiology
Dissemination and evolution of SARS-CoV-2 in the early pandemic phase in South America남미의 초기 전염병 단계에서 SARS-CoV-2의 보급 및 진화Article Published on 2021-07-012022-09-11 Journal: Journal of medical virology [Category] MERS, SARS, 유전자 메커니즘, 진단, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus Americas Analysis analyzed independently Bayesian approach Brazil Characteristics clade clades concerning Coronavirus-2 country decrease demonstrated dissemination Ecuador Evolution of SARS-CoV-2 frequencies Frequency genomic indicated Infection information Lineage pandemic pandemic spread phylodynamic Prevalence prevalent reduction respiratory sampling SARS Coronavirus SARS-CoV-2 Seven Severe acute respiratory syndrome severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus-2 significantly social movement South South America Spread stationary stationary phase Suriname These data Viral virulence virus WGS Whole-genome sequence [DOI] 10.1002/jmv.26967 PMC 바로가기 [Article Type] Article
A Comprehensive Molecular Epidemiological Analysis of SARS-CoV-2 Infection in Cyprus from April 2020 to January 2021: Evidence of a Highly Polyphyletic and Evolving Epidemic2020 년 4 월부터 2021 년 1 월까지 키프로스에서 SARS-COV-2 감염에 대한 포괄적 인 분자 역학 분석 : 고도로 다발성 및 진화 전염병의 증거Article Published on 2021-06-092022-09-10 Journal: Viruses [Category] MERS, SARS, 변종, 유전자 메커니즘, [키워드] A222V A570D acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 adopted affected analyses Analysis antibody Asia B.1 B.1.1.7 B.1.177 Brazil characterized clinical sample clinical samples Comprehensive concern coronavirus COVID-19 Cyprus Czech Republic D1118H D614G Denmark diagnostic diagnostic testing Epidemic epidemiological Europe European evidence of Genetic genetic analysis Germany global public health Health crisis hospitalized patients immune evasion indicated Infection initial island Italy L18F limit Lineage lineages lockdown majority measure molecular Molecular epidemiology Mutation N439K N501Y nasopharyngeal swabs outbreak P681H performed phylodynamic Phylogenetic phylogenetic analyses Phylogenetic analysis phylogeographic analysis prevalent lineage respiratory resulting retrospective S protein S982A SARS-CoV-2 SARS-CoV-2 epidemic SARS-CoV-2 genomic sequence SARS-CoV-2 genomic sequences SARS-COV-2 infection SARS-CoV-2 isolate SARS-CoV-2 isolates severe acute respiratory syndrome Coronavirus Slovenia Spread study period Switzerland the S protein the SARS-CoV-2 Transmissibility transmissibility of SARS-CoV-2 United Kingdom USA variant virus VoC [DOI] 10.3390/v13061098 PMC 바로가기 [Article Type] Article
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nationsResearch Article Published on 2021-06-082022-10-28 Journal: Virus Evolution [Category] COVID-19, [키워드] acute respiratory syndrome assist Australia characterising Contact tracing coronavirus country COVID-19 declined defined demonstrated disease early stage Effect effective epidemiological history Epidemiology First wave Genome genomic data Health human movement Iceland International introduced Ministry of Health New New Zealand pandemic phylodynamic Phylogenomics reduction Reproduction number reveal robust spread of COVID-19 subsampling Surveillance Taiwan transmission cluster Travel viral epidemics [DOI] 10.1093/ve/veab052 PMC 바로가기 [Article Type] Research Article
Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimesSARS-CoV-2 백신 투여 요법의 역학 및 진화적 고려 사항Research Article Published on 2021-04-232022-09-10 Journal: Science (New York, N.y.) [Category] MERS, SARS, 변종, 진단, [키워드] accumulated acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 administration Affect antigenic evolution approach approved assumption available dose available doses build building can be used Characteristics clinical evaluation Combination condition consequence continuous spectrum coronavirus country COVID-19 infection COVID-19 infections Critical decrease dependent on determine disease severity distribution dose dosing regimen effective vaccine effort elicited epidemiological equity Evolution example first dose highlight immune Immune escape immune response immune responses Immunity immunized Impact imperative improves in some increase increase in individual individual immunity individuals Infection infections International Intervention long term medium middle mitigate mutations natural immunity Numerous outcome outcomes pandemic parameters phylodynamic population immunity Primary infection problems proportion public policies question rationale receiving reduce reduced replicate respiratory resulting robustness Safe SARS-CoV-2 SARS-CoV-2 vaccine SARS-CoV-2 vaccines SARS-CoV-2 viral Science second dose secondary infections serological data severe acute respiratory syndrome Coronavirus short term single dose single vaccine Spread strength Stress subsequent susceptibility susceptible switching the timing the vaccine trajectory vaccinal vaccination vaccination rate vaccination rates Vaccine vaccine dose Vaccines variants Variation variations Viral viral adaptation viral antigenic evolution Viral load viral loads virus [DOI] 10.1126/science.abg8663 PMC 바로가기 [Article Type] Research Article
SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in ItalySARS-CoV-2 이동 역학 및 숨겨진 저장소는 잠재적으로 이탈리아에서 공중 보건 개입의 효능을 제한합니다Article Published on 2021-04-212022-09-10 Journal: Communications Biology [Category] MERS, SARS, 변종, 진단, [키워드] acting Analysis catalyzed characterized Cluster Clusters country driving Efficacy Epidemic epidemic wave epidemiological data Evidence evidence of Genetic hidden hospitalizations implementation Infection infections investigated Italy limit lockdown Mathematical modelling pandemic phylodynamic phylogenetics Public health intervention Public health interventions reduced reservoir reservoirs SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 transmission shifting summer sustained transmission cluster Transmission dynamics vaccination Vaccine Viral Viral genetics viral spread [DOI] 10.1038/s42003-021-02025-0 PMC 바로가기 [Article Type] Article
Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventionsCOVID-19 전염병의 심각성과 비약물적 개입의 시기 간의 연관성에 대한 유전적 증거Article Published on 2021-04-122022-09-10 Journal: Nature Communications [Category] MERS, SARS, 유전자 메커니즘, 치료기술, [키워드] association carried COVID-19 COVID-19 epidemic cumulative death Effect Effectiveness elapsed Epidemic Epidemics Epidemiology estimate examined explain genetic evidence implementation Intervention Intervention effects less location lockdown measure morbidity and mortality National phylodynamic Phylogenetic analysis Phylogeny Population genetics Public health intervention reported SARS-CoV-2 SARS-CoV-2 sequence sequence severe COVID-19 severity the epidemic Travel variance Variation variations Viral whole genome [DOI] 10.1038/s41467-021-22366-y PMC 바로가기 [Article Type] Article
A Phylodynamic Workflow to Rapidly Gain Insights into the Dispersal History and Dynamics of SARS-CoV-2 LineagesSARS-CoV-2 계통의 분산 이력 및 역학에 대한 통찰력을 신속하게 얻기 위한 계통역학 워크플로Methods Published on 2021-04-032022-09-10 Journal: Molecular Biology and Evolution [Category] MERS, SARS, 변종, 유전자 메커니즘, [키워드] Analysis analyzed applied approaches benefit country COVID-19 COVID-19 pandemic dispersal Dynamics Epidemic epidemiological focus Gain genetic data genomic sequence highest history insight Intervention lineages lockdown measures measure pandemic phylodynamic phylogenetic clusters phylogeography proof proof of concept regions SARS-CoV-2 SARS-CoV-2 genomes Scientific community spatiotemporal unique virus transmission Volume [DOI] 10.1093/molbev/msaa284 PMC 바로가기 [Article Type] Methods
SARS-CoV-2 Molecular Transmission Clusters and Containment Measures in Ten European Regions during the First Pandemic WaveArticle Published on 2021-03-092022-10-29 Journal: International Review of Cell and Molecular Biology [Category] COVID-19, [키워드] age Analysis bioinformatics Cluster Clusters Containment country COVID-19 demographic factor Effectiveness eight European genomic data group identify Intervention lockdown measure molecular Molecular epidemiology molecular transmission clusters MONITOR pandemic phylodynamic phylodynamics Phylogenetic phylogenetics public health Region regions SARS-CoV-2 SARS-CoV-2 sequence sequence spatiotemporal Specific Spread the SARS-CoV-2 through contact Transmission transmission cluster Wave whole genome [DOI] 10.3390/life11030219 PMC 바로가기 [Article Type] Article