Genomic Surveillance of Circulating SARS-CoV-2 in South East Italy: A One-Year Retrospective Genetic Study이탈리아 남동부에서 순환하는 SARS-CoV-2의 게놈 감시: 1년 후향적 유전 연구Article Published on 2021-04-222022-09-10 Journal: Viruses [Category] MERS, SARS, 변종, [키워드] Apulia Basilicata circulating viral variants clade collected COVID-19 COVID-19 pandemic draft East epidemiological epidemiological surveillance Genetic Genome Genome sequencing Genomic analysis Genomic surveillance Infection Italy Lineage lineages new SARS-CoV-2 Nextstrain clade Pangolin lineage performed regions SARS-CoV-2 SARS-CoV-2 strain SARS-CoV-2 strains SARS-CoV-2 variant SARS-CoV-2 variants second wave sequenced South Spread Surveillance Therapies transmission rate Vaccine variants of concern Viral viral dynamics Whole genome sequencing [DOI] 10.3390/v13050731 PMC 바로가기 [Article Type] Article
Impact of January 2021 curfew measures on SARS-CoV-2 B.1.1.7 circulation in France2021년 1월 통행금지 조치가 프랑스의 SARS-CoV-2 B.1.1.7 유통에 미치는 영향Rapid Communication Published on 2021-04-152022-09-10 Journal: Eurosurveillance [Category] MERS, SARS, 변종, [키워드] B.1.1.7 B.1.1.7 variant calibrated circulation curfew expected France genomic Genomic surveillance hospitalisation hospitalisations Impact increase in mathematical mathematical model measure modelling plateau progression SARS-CoV-2 SARS-CoV-2 B.1.1.7 School holiday School holidays social distancing Spread strain Surveillance the SARS-CoV-2 Transmission vaccination variants [DOI] 10.2807/1560-7917.ES.2021.26.15.2100272 PMC 바로가기 [Article Type] Rapid Communication
Pervasive transmission of E484K and emergence of VUI-NP13L with evidence of SARS-CoV-2 co-infection events by two different lineages in Rio Grande do Sul, Brazil브라질 리오그란데두술에서 2개의 다른 계통에 의한 SARS-CoV-2 동시 감염 사건의 증거와 함께 E484K의 만연한 전파 및 VUI-NP13L의 출현Article Published on 2021-04-152022-09-11 Journal: Virus research [Category] SARS, 변종, [키워드] B.1.1.28 Brazil caused characterized circulating Cluster Clustering analysis Co-infection COVID-19 E484K effective emergence event Evidence genomic Genomic surveillance identify independent investigated Lineage lineages media MOST Mutation mutations novel vaccines Occurrence other variant other variants P13L. raised recent Rio Grande SARS-CoV-2 SARS-CoV-2 lineage SARS-CoV-2 strains Scientific community sequenced Social distancing measure social distancing measures South Africa Spread Strains Transmission transmission rate United Kingdom Vaccines variant widespread [DOI] 10.1016/j.virusres.2021.198345 PMC 바로가기 [Article Type] Article
Genomic surveillance of SARS-CoV-2 in the Republic of Congo콩고공화국에서 SARS-CoV-2의 게놈 감시Article Published on 2021-04-012022-09-11 Journal: International Journal of Infectious Diseases [Category] SARS, 변종, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 African assigned carried clade Clusters collected contributing to coronavirus Ct values D614G database Genome genomes Genomic surveillance Illumina individual information Lineage Lineage B1 Mutation Next-generation sequencing NGS pangolin provide Republic of Congo RT-PCR SARS CoV SARS CoV-2 SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genomes SARS-CoV-2 lineage SARS-CoV-2 sequence SARS-CoV-2 variants screened sequenced severe acute respiratory syndrome Coronavirus shown spike mutation submitted Surveillance Transmission virus WGS Whole genome sequencing whole-genome sequencing [DOI] 10.1016/j.ijid.2021.03.036 PMC 바로가기 [Article Type] Article
Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa남아프리카 케이프타운에 SARS-CoV-2의 여러 초기 도입Article Published on 2021-03-222022-09-10 Journal: Viruses [Category] SARS, 치료기술, [키워드] 95% confidence interval addition Analysis B.1 Bayesian method Bayesian methods Betacoronavirus Cape Cape Town clade CLOCK Cluster Contact coronavirus disease Coronavirus disease 2019 COVID-19 determine Epidemic Genome sequencing genomes Genomic surveillance likelihood Lineage lineages Local Maximum likelihood molecular Molecular epidemiology Multiple Mutation Nanopore nanopore sequencing Netherland Netherlands nine occurred outbreak pandemic Patient Phylogenetic phylogenetic inference phylogenetics produced SARS-CoV-2 sequence sequences Sequencing South Africa Spread Support town Transmission were used Western Cape Province whole genomes [DOI] 10.3390/v13030526 PMC 바로가기 [Article Type] Article
Phylogenomic Evidence of Reinfection and Persistence of SARS-CoV-2: First Report from ColombiaArticle Published on 2021-03-192022-10-28 Journal: Vaccines [Category] COVID-19, [키워드] Analysis B.1 changes in Colombia coronavirus disease COVID-19 Disease progression event Evidence evidence of Evolution of SARS-CoV-2 exhibiting Genetic polymorphism Genome genomic Genomic surveillance highlighting National Oxford Patient phylogenetics positive RT-PCR raised Reinfection Reinfections report SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 lineage sequenced subsequent Surveillance translate Transmission dynamics vaccination variant viral persistence virus was performed [DOI] 10.3390/vaccines9030282 PMC 바로가기 [Article Type] Article
Genomic Variations in SARS-CoV-2 Genomes From Gujarat: Underlying Role of Variants in Disease Epidemiology구자라트의 SARS-CoV-2 게놈의 게놈 변이: 질병 역학에서 변이의 기본 역할Genetics Published on 2021-03-192022-08-13 Journal: Frontiers in Genetics [Category] 유전자 메커니즘, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 affected allele frequency analyzed average caused clade Cluster coronavirus coronavirus disease Coronavirus disease 2019 country Course COVID-19 dataset datasets death death rate deaths Deceased Deleterious Ebola Evolution genomic Genomic surveillance GISAID globe Gujarat Haplotype haplotyping highest in viral include India list measles MERS Middle East Middle East respiratory syndrome Missense mutation Missense mutations Mortality Mutation mutation analysis National NCBI Novel coronavirus nucleocapsid ORF3a P -value Pandemics past Pathogenesis Pathogens Patient phylogenetic distribution recovered patient recovered patients respiratory role SARS-CoV-2 SARS-CoV-2 (2019-nCoV) SARS-CoV-2 genome SARS-CoV-2 genomes sequenced Severe acute respiratory syndrome severe acute respiratory syndrome Coronavirus significantly syndrome variant variants Viral viral epidemiology viral genome viral genomes viral pathogenesis virulence while [DOI] 10.3389/fgene.2021.586569 PMC 바로가기 [Article Type] Genetics
Genomic Characterization of a Novel SARS-CoV-2 Lineage from Rio de Janeiro, BrazilLetter to the Editor Published on 2021-03-012022-10-30 Journal: Journal of Virology [Category] COVID-19, [키워드] Brazil characterization COVID-19 E484K Genomic surveillance novel P.2 Rio de Janeiro SARS-CoV-2 [DOI] 10.1128/JVI.00119-21 PMC 바로가기 [Article Type] Letter to the Editor
Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report남아프리카에서 SARS-CoV-2의 조기 전파: 역학 및 계통 발생 보고서Article Published on 2021-02-012022-09-11 Journal: International Journal of Infectious Diseases [Category] SARS, 치료기술, [키워드] average Cape COVID-19 pandemic deaths decrease demonstrated effective Epidemic epidemiological Epidemiological study Epidemiology estimate Evidence evidence of faster Generation Genomic surveillance growth growth rate heterogeneous hospital Infection International Lineage Local measure molecular Mortality Natal network next generation sequencing NGS-SA nosocomial Nosocomial transmission outbreak Phylogenetic port of entry provided Reproduction number SARS-CoV-2 SARS-CoV-2 epidemic SARS-CoV2 South South Africa Spread subsequent suggested the epidemic the SARS-CoV-2 Transmission Transmission dynamics Transmission genomics. transmission of SARS-CoV-2 transmission potential whole genome [DOI] 10.1016/j.ijid.2020.11.128 PMC 바로가기 [Article Type] Article
VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samplesArticle Published on 2021-01-282022-10-28 Journal: Patterns [Category] COVID-19, [키워드] Abstract acute respiratory syndrome Analysis approach Cluster co-occurrence condition consensus sequences Contact tracing coronavirus COVID-19 COVID-19 pandemic data-driven dataset diffusion epidemiological Evolution Evolution of SARS-CoV-2 explain Frequency genomic Genomic surveillance highlight homoplasies homoplastic variants identify IMPROVE Infection infection chain Intra-host diversity intra-host genomic diversity involved joint limitation limitations mutations outperform pathogen phylogenetic inference Phylogenomics Phylogeny platform Positive selection predict profiles quantification raw sequencing data Research reveal RNA sequencing robust SARS-CoV-2 SARS-CoV-2 consensus sequence SARS-CoV-2 evolution selected sequencing data spike gene Surveillance variant viral evolution viral genomes viral sample Viral variants [DOI] 10.1016/j.patter.2021.100212 PMC 바로가기 [Article Type] Article