The origin and early spread of SARS-CoV-2 in Europe유럽에서 SARS-CoV-2의 기원과 초기 확산Article Published on 2021-03-022022-09-11 Journal: Proceedings of the National Academy of Sciences of [Category] SARS, 유전자 메커니즘, [키워드] Analysis China disease disease import estimated rate Europe European event Evidence geographic location Germany information Italy Lineage Local Migration Occurrence offer pandemic phylodynamic phylogeography predominant Region regions SARS-CoV-2 SARS-CoV-2 genomes SARS-CoV-2 pandemic Spread spring the epidemic the SARS-CoV-2 Timeliness Transmission viral genome sequence viral genome sequences virus [DOI] 10.1073/pnas.2012008118 PMC 바로가기 [Article Type] Article
Genomic Epidemiology of SARS-CoV-2 in Madrid, Spain, during the First Wave of the Pandemic: Fast Spread and Early Dominance by D614G VariantsArticle Published on 2021-02-222022-10-29 Journal: Microorganisms [Category] COVID-19, [키워드] acute respiratory syndrome Analysis B.1 collected coronavirus coronavirus disease COVID-19 D614G D614G mutation dominance dominant epidemic wave European population Frequency Genome Genome sequences hospital independent International Lineage lockdown National phylodynamic protein sequence RT-PCR SARS-CoV-2 SARS-CoV-2 viral sequenced Spain Spanish suggested the Spike Transport Wave [DOI] 10.3390/microorganisms9020454 PMC 바로가기 [Article Type] Article
Phylodynamic analysis in the understanding of the current COVID-19 pandemic and its utility in vaccine and antiviral design and assessmentArticle Published on 2021-02-192023-06-14 Journal: Human vaccines & immunotherapeutics [Category] MERS, SARS, [키워드] antivirals COVID-19 phylodynamic SARS-CoV-2 Vaccines [DOI] 10.1080/21645515.2021.1880254 PMC 바로가기
Evolutionary Dynamics and Dissemination Pattern of the SARS-CoV-2 Lineage B.1.1.33 During the Early Pandemic Phase in BrazilMicrobiology Published on 2021-02-172022-10-31 Journal: Frontiers in Microbiology [Category] COVID-19, [키워드] acute respiratory syndrome Analysis B.1.1 B.1.1.33 Brazil clade collected Community community transmission Continuous coronavirus Coronavirus disease 2019 Coronavirus-2 country Dynamics effective Effectiveness Epidemic Europe fraction genetic lineages Genome genomic implementation indicate information introduced investigated Lineage Local median moderate mutations North America Oceania pattern phase phylodynamic Prevalence Public health intervention reached reduced Region reproductive responsible reveal Rio de Janeiro SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 lineage severe acute respiratory syndrome coronavirus-2 South strain Surveillance the SARS-CoV-2 Travel viral genome Viral transmission [DOI] 10.3389/fmicb.2020.615280 PMC 바로가기 [Article Type] Microbiology
Genomic epidemiology of the early stages of the SARS-CoV-2 outbreak in Russia러시아 SARS-CoV-2 발병 초기 단계의 게놈 역학Article Published on 2021-01-282022-09-10 Journal: Nature Communications [Category] MERS, 변종, 유전자 메커니즘, [키워드] Analysis China Cluster COVID-19 epidemic early stage effective Epidemiology European hospital initial Lineage nosocomial notable outbreak pandemic phylodynamic phylogenetics phylogeographic analysis Reproduction number reveal Russia Saint Saint Petersburg SARS-CoV-2 Spread strain the epidemic the SARS-CoV-2 Transmission Travel Viral viral epidemiology viral evolution Viral transmission whole genome sequence [DOI] 10.1038/s41467-020-20880-z PMC 바로가기 [Article Type] Article
Intra-Host Diversity of SARS-Cov-2 Should Not Be Neglected: Case of the State of Victoria, AustraliaArticle Published on 2021-01-192022-10-28 Journal: Viruses [Category] COVID-19, [키워드] acute respiratory syndrome Analysis changed changes in collected coronavirus COVID-19 pandemic dataset determine Diversity effort epidemiological Epidemiology etiological agent Evidence Factor Genes Genetic genetic bottleneck genomic sequence glycoprotein greater highlighting Host Intra-host diversity Intra-host variant iSNVs less lineages magnitude MONITOR N genes Next-generation sequencing NGS nonsynonymous nonsynonymous iSNVs nonsynonymous variant ORF1a ORF1b pathogen phylodynamic Phylogenetic Quasispecies quasispecy real time RNA virus SARS-CoV-2 SARS-CoV-2 gene single-nucleotide state Transmission variant Victoria virus [DOI] 10.3390/v13010133 PMC 바로가기 [Article Type] Article
SARS-CoV-2 genomic characterization and clinical manifestation of the COVID-19 outbreak in Uruguay우루과이에서 발생한 COVID-19 발병의 SARS-CoV-2 게놈 특성 및 임상 징후Coronaviruses Published on 2021-01-152022-09-10 Journal: Emerging Microbes & Infections [Category] SARS, 변종, 진단, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Analysis Arterial hypertension association caused clade clinical correlations clinical parameter Cohort contribute coronavirus correlated correlation COVID-19 COVID-19 outbreak D614G D614G mutation disease dominance FIVE full genome amplicon sequencing Genetic genomic global public health global public health emergency Health Organization Healthcare system hypertension ICU admission independent Inpatients kidney Kidney failure Latin America Local make up minimum Mutation non-structural protein outbreak outcome outpatients and inpatient pandemic partial lockdown performed phylodynamic phylogeographic analysis phylogeographic BEAST analysis respiratory Respiratory illness resulting SARS-CoV-2 SARS-COV-2 infection sequence sequenced sequences severe acute respiratory syndrome Coronavirus significantly South South America spike D614G genetic mutation the SARS-CoV-2 Transmission transmission clusters transmissions Uruguay Viral viral genome viral genomes viral strain viral strains virus World Health Organization [DOI] 10.1080/22221751.2020.1863747 PMC 바로가기 [Article Type] Coronaviruses
Genomic epidemiology of a densely sampled COVID-19 outbreak in ChinaResearch Article Published on 2021-01-142022-10-28 Journal: Virus Evolution [Category] COVID-19, [키워드] Analysis basic reproduction number Bayesian center China Control COVID-19 outbreak data set diagnose dispersal effective Epidemic epidemiological epidemiological history Epidemiology estimate Genetic Genetic epidemiology Genome genomic highest Infection isolate modelling outbreak pandemic phylodynamic phylodynamics phylogenetics reported Reproduction number SARS- CoV-2 SARS-CoV-2 sequence structured coalescent the SARS-CoV-2 unlikely [DOI] 10.1093/ve/veaa102 PMC 바로가기 [Article Type] Research Article
The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging EpidemicArticle Published on 2021-01-082022-10-28 Journal: Viruses [Category] COVID-19, MERS, [키워드] Analysis applied Bayesian phylogenetics birth–death Cluster coalescent criteria dataset Diversity early stage epidemiological estimate Evolutionary rate Impact Inference molecular New outbreak Outbreaks outperform parameters phylodynamic phylodynamics required robust SARS-CoV-2 sequence supported Transmission dynamics Variability viral outbreak [DOI] 10.3390/v13010079 PMC 바로가기 [Article Type] Article
Transmission route and introduction of pandemic SARS-CoV-2 between China, Italy, and Spain중국, 이탈리아, 스페인 간 전염병 SARS-CoV-2의 전파 경로 및 도입Article Published on 2021-01-012022-09-11 Journal: Journal of medical virology [Category] SARS, 유전자 메커니즘, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Analysis assumption Bayesian China circulation classical CLOCK coronavirus country Decision-making epidemiological epidemiological surveillance event events Evolution explain Frame genome sequence GISAID highest Italy median Migration migration rate molecular multitype bearth-death number of introductions. occurred pandemic phylodynamic phylogeographic analysis proportion public health respiratory SARS-CoV-2 Shanghai Spain Surveillance TMRCA tree virus while [DOI] 10.1002/jmv.26333 PMC 바로가기 [Article Type] Article