Phylogenomics and phylodynamics of SARS-CoV-2 genomes retrieved from IndiaShort Communication Published on 2020-11-302022-10-31 Journal: Future Virology [Category] COVID-19, [키워드] acute respiratory syndrome basic reproduction number BEAST build calculate Clusters community transmission coronavirus effective Evolution growth Haplotype India investigated isolate material phylodynamic phylodynamics Phylogenetic Phylogenomics Population dynamics retrieved reveal SARS-CoV-2 SARS-CoV-2 genome SARS-ncov-2 was used were used whole genome [DOI] 10.2217/fvl-2020-0243 PMC 바로가기 [Article Type] Short Communication
Bovine Coronavirus: Variability, Evolution, and Dispersal Patterns of a No Longer Neglected BetacoronavirusArticle Published on 2020-11-102022-10-28 Journal: Viruses [Category] Coronavirus, [키워드] affecting approach bovine Bovine coronavirus clinical impact Cluster compensatory mutation Complete complex contrary coronavirus disease European Evidence evidenced Evolution favor Genome Host International Migration Mutation Neglected Occurrence other coronaviruses pathogen pattern phylodynamic phylodynamics phylogeography plasticity preventive measure Protein recombination rate reduce Respiratory disease Selection selective spike gene Spike protein Strains the United State tissue tropism vaccination Variability viral evolution viral genome viral tropism while [DOI] 10.3390/v12111285 PMC 바로가기 [Article Type] Article
Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within IsraelArticle Published on 2020-11-022022-10-29 Journal: Nature Communications [Category] COVID-19, SARS, [키워드] America Analysis basic reproduction number comprehensive analysis contributed Effectiveness Epidemiology Evidence Genome genome sequence heterogeneity implementation increasingly infected individual phylodynamic phylogenetics proportion rate of infection reducing resulting SARS-CoV-2 SARS-CoV-2 sequence secondary infections sequence significant effect significantly social distancing Social distancing measure social distancing measures Spread superspreading events the United State Transmission Transmission dynamics viral pathogens viral sequence viral spread virus [DOI] 10.1038/s41467-020-19248-0 PMC 바로가기 [Article Type] Article
A Founder Effect Led Early SARS-CoV-2 Transmission in Spain스페인에서 초기 SARS-CoV-2 전파를 주도한 파운더 효과Genetic Diversity and Evolution Published on 2020-10-302022-09-10 Journal: Journal of Virology [Category] MERS, 변종, 유전자 메커니즘, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus analyses Analysis Bayesian characterized clade clades Cluster coronavirus country COVID-19 COVID-19 case D614 variant D614G D614G substitution diffusion displaying dissemination Effect Europe European country explosion FIVE founder effect higher infectivity independent majority maximum-likelihood MOST Multiple occurred ORF8 pandemic phylodynamic phylodynamics Phylogenetic phylogenetic analyses phylogeography Prevalence prevalent pseudotyped virion pseudotyped virions Region replaced REPLACED BY respiratory S gene SARS-CoV-2 SARS-CoV-2 pandemic SARS-CoV-2 spike protein sequence sequences severe acute respiratory syndrome Coronavirus severe acute respiratory syndrome coronavirus 2 Spain Spike protein the epidemic the SARS-CoV-2 the spike protein transmitted variant virus viruses whole-genome Whole-genome sequence Wuhan Wuhan, China [DOI] 10.1128/JVI.01583-20 PMC 바로가기 [Article Type] Genetic Diversity and Evolution
Tracking the COVID-19 pandemic in Australia using genomicsArticle Published on 2020-09-012022-10-04 Journal: Nature Communications [Category] SARS, 유전자 메커니즘, 진단, [키워드] can be used Cluster COVID-19 cases COVID-19 pandemic effective Effectiveness epidemiological Epidemiology genomic healthcare identify increasingly indicate management pathogen transmission Patient phylodynamic physical distancing public health Public health responses reducing reduction in reproductive reveal SARS-CoV-2 SARS-CoV-2 transmission sequence Sequencing Support Transmission Travel Victoria Viral genetics viral infection [DOI] 10.1038/s41467-020-18314-x PMC 바로가기 [Article Type] Article
Emerging phylogenetic structure of the SARS-CoV-2 pandemicRapid Communication Published on 2020-07-102022-10-28 Journal: Virus Evolution [Category] COVID-19, [키워드] accumulating approach cell entry Continuous COVID-19 Efficacy effort epidemiological Epidemiology Europe European event example Factors gene region genetic diversity globe growth humans increase in increasingly MONITOR more difficult Mutation occur pandemic phylodynamic phylodynamics Phylogenetic question responsible reveal SARS-CoV-2 SARS-CoV-2 lineage significantly Spread Structure Support the SARS-CoV-2 trajectory viral replication virus virus demography [DOI] 10.1093/ve/veaa082 PMC 바로가기 [Article Type] Rapid Communication
Genetic cluster analysis of SARS-CoV-2 and the identification of those responsible for the major outbreaks in various countriesResearch Article Published on 2020-06-112022-10-31 Journal: Emerging Microbes & Infections [Category] COVID-19, MERS, SARS, [키워드] analysed Analysis Asia caused China Cluster Clusters contributed coronavirus country COVID-19 defined dominant Europe Evolution facilitate Genetic Genome genome sequence genomic sequence GISAID identification Mutation occurred outbreak pandemic performed phylodynamic Phylodynamic analysis platform probe reported responsible SARS-CoV-2 severe pneumonia South Korea spread to Super-spreader Transmission Transmission dynamics transmission of SARS-CoV-2 virus Washington [DOI] 10.1080/22221751.2020.1773745 PMC 바로가기 [Article Type] Research Article
Inferring host roles in bayesian phylodynamics of global avian influenza A virus H9N2Article Published on 2019-12-012023-06-22 Journal: Virology [Category] 조류인플루엔자, [키워드] Avian host transitions Avian influenza virus Bayesian Generalized linear model H9N2 phylodynamic Phylogeographic Poultry trade. [DOI] 10.1016/j.virol.2019.09.011
GI-16 lineage (624/I or Q1), there and back again: The history of one of the major threats for poultry farming of our eraResearch Article Published on 2018-12-202022-10-28 Journal: PLoS ONE [Category] Coronavirus, [키워드] analysed appear approach Asia bronchitis China Chinese collected consequence country demonstrated described diffusion effective epidemiological Epidemiology Europe events example genetic variability Genotype genotypes highlight IBV independent Italian Italy knowledge lack Lineage Middle East Misconception Molecular epidemiology nucleus pathogen phylodynamic sequence South America strain the S1 protein threat Vaccination strategy virus [DOI] 10.1371/journal.pone.0203513 PMC 바로가기 [Article Type] Research Article
Think globally, act locally: Phylodynamic reconstruction of infectious bronchitis virus (IBV) QX genotype (GI-19 lineage) reveals different population dynamics and spreading patterns when evaluated on different epidemiological scalesResearch Article Published on 2017-09-072022-10-28 Journal: PLoS ONE [Category] Coronavirus, MERS, [키워드] Analysis approach Asian Bayesian bronchitis characterized China circulation collected Combination connection contribute country diffusion disease effective effort epidemiological epidemiological link European evaluated event Evolution fluctuation Genotype Health highlighting IBV implementation in viral Infectious Bronchitis Virus International Italian region Italy limit Lineage Local Measures Middle East Migration Molecular epidemiology occur performed persistence phylodynamic Prevent producing question reconstructed reveal sequence Spread strain Strains successive waves supported Threats transmission route virus [DOI] 10.1371/journal.pone.0184401 PMC 바로가기 [Article Type] Research Article