Whole genome sequence analysis showing unique SARS-CoV-2 lineages of B.1.524 and AU.2 in Malaysia말레이시아에서 B.1.524 및 AU.2의 독특한 SARS-COV-2 계통을 보여주는 전체 게놈 서열 분석Research Article Published on 2022-02-252022-09-10 Journal: PLoS ONE [Category] COVID19(2023년), MERS, SARS, 변종, 진단, [키워드] age Analysis analyzed approach association caused characterized China circulating clade country COVID-19 COVID-19 case COVID-19 cases D614G variant D614G variants dispersion dominant lineage Evolution Gender genetic diversity genome sequence GISAID Lineage lineages Malaysia Missense mutation nasopharyngeal NCBI oropharyngeal swab pandemic Phylogenetic analysis positive Prevalence real-time RT-PCR reported responsible RT-PCR SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 genome sequence SARS-CoV-2 genome sequences SARS-CoV-2 isolate SARS-CoV-2 isolates SARS-CoV-2 lineage scarcity selected sequence sequenced spike Spike protein Spread statistical analysis submitted sustained the SARS-CoV-2 the spike protein transmembrane domain unique virus WGS [DOI] 10.1371/journal.pone.0263678 PMC 바로가기 [Article Type] Research Article
Predicting the mutational drivers of future SARS-CoV-2 variants of concern우려되는 미래 SARS-CoV-2 변이체의 돌연변이 동인 예측Article Published on 2022-02-232022-09-11 Journal: Science Translational Medicine [Category] COVID19(2023년), SARS, 변종, [키워드] advance Affect Amino acid antibodies applied approach Behavior binding Causal structure contribute covariate driver Effect Efficacy elevated epidemiological Epidemiology Evidence Evolution feature genomic high accuracy host immunity immunology IMPROVE Influenza Mutation natural infection natural infection-derived immunity omicron pandemic pathogen Pathogens predict Predictive Predictive value protein sequence public health Receiver operator characteristic SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 variant shifting Spread surveillance data tested therapeutic therapeutic antibodies Transmissibility Vaccine variants of concern viral fitness viruses waned [DOI] 10.1126/scitranslmed.abk3445 PMC 바로가기 [Article Type] Article
SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escapeBrief Report Published on 2022-02-092022-10-31 Journal: Cell Host & Microbe [Category] COVID-19, COVID19(2023년), MERS, SARS, [키워드] Abstract advanced HIV disease antibody Beta Beta variant BNT162b2 convalescent plasma Delta delta variant elicited escaped Evolution example help HIV HIV disease hosts Immune escape Immunity implication infections mapped Mutation neutralization omicron other variants Pfizer predict Prolonged infection regions SARS-CoV-2 SARS-CoV-2 evolution SARS-COV-2 infection SARS-CoV-2 strain serological South tested Vaccine variant variants variants of concern virus [DOI] 10.1016/j.chom.2022.01.005 PMC 바로가기 [Article Type] Brief Report
Comparison of SARS-CoV-2 Evolution in Paediatric Primary Airway Epithelial Cell Cultures Compared with Vero-Derived Cell LinesArticle Published on 2022-02-052022-10-28 Journal: Viruses [Category] COVID-19, COVID19(2023년), SARS, [키워드] Adults age airway arising Cell Cell culture cell lines cells changes in children cleavage site co-morbidities Cohort Culture Delta dependent on driving epithelial Evidence Evolution Factor fixation Genetic genetic diversity genotypic growth highlight Host host cell factor host cells human respiratory epithelium in vitro infect isolate isolates LINE morbidity and mortality Mutation nasal passages phenotypic plasticity polybasic primary airway epithelial cells reduced remained respiratory epithelial cells resulting SARS-CoV-2 SARS-CoV-2 evolution several variant spike Strains variant Vero Vero cells viral evolution Virus evolution VoC whole-genome sequencing [DOI] 10.3390/v14020325 PMC 바로가기 [Article Type] Article
Diversity of Coronaviruses with Particular Attention to the Interspecies Transmission of SARS-CoV-2Review Published on 2022-02-042022-10-28 Journal: Animals : an Open Access Journal from MDPI [Category] COVID-19, [키워드] acute respiratory syndrome angiotensin-converting enzyme 2 approach Attention caused Cell China complex complicate coronavirus coronavirus disease COVID-19 COVID-19 pandemic cytoplasm determinant Diversity effort Epidemiology Evidence Evolution global pandemic Health Host host range host susceptibility Human humans Impact implementation infect infection with SARS-CoV-2 interspecies transmission membrane fusion mitigate natural one health outbreak pandemic Particular problems question raising RBD receptor receptors Replication reported SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 virus simple susceptibility the receptor-binding domain Transmission variety virus wild animals [DOI] 10.3390/ani12030378 PMC 바로가기 [Article Type] Review
Use of Sanger protocols to identify variants of concern, key mutations and track evolution of SARS-CoV-2SARS-CoV-2의 관심 변종, 주요 돌연변이를 식별하고 진화를 추적하기 위한 Sanger 프로토콜 사용Article Published on 2022-02-012022-09-11 Journal: Journal of virological methods [Category] COVID19(2023년), SARS, 변종, [키워드] ABI Amino acid B.1.1.28 Brazil Codons COVID-19 COVID-19 pathogenesis delta variant DNA sequenced Epidemics Evolution of SARS-CoV-2 followed by Gamma genomic Genomic surveillance identify IMPROVE individual leftovers Lineage Local MONITOR Mutation Nasopharyngeal swab nasopharyngeal swabs Next-generation sequencing P.1 pandemic prevalent protocol protocols Quantitative RBD Receptor binding domain RNA RT-PCR SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 variant SARS-CoV-2 variants Semi sequence sequences Sequencing sequencing protocols simplicity spike gene Surveillance vaccine response variant variants variants of concern Variation Viral protein [DOI] 10.1016/j.jviromet.2021.114422 PMC 바로가기 [Article Type] Article
SARS-CoV-2 variants with reduced infectivity and varied sensitivity to the BNT162b2 vaccine are developed during the course of infection감염성이 감소하고 BNT162B2 백신에 대한 감도가 다양한 SARS-COV-2 변이체가 감염 과정에서 개발됩니다.Clinical Trial Published on 2022-01-122022-08-13 Journal: PLoS Pathogens [Category] Biochemistry, 변종, 임상, 치료기술, 치료법, [키워드] addition Affect Analysis analyzed Anti-spike Antibody neutralization antibody neutralization activity Author BNT162b2 BNT162b2 vaccine circulating convalescent plasma Course COVID-19 vaccine COVID-19 vaccines demonstrated elicit employment Evolution Frequency highlight Host human host human population impair in-depth analysis increase in individual infected individual infected individuals Infection infectivity capacity intra-host SARS-CoV-2 variant intra-host SARS-CoV-2 variants Intra-host variant intra-host variants L1197I mutation landscape less low frequencies mRNA mRNA-based mutated mutated variant mutated variants N gene N genes natural infection neutralization Neutralizing antibodies nose-throat swab nose-throat swabs pandemic plasma plasma neutralization activity platform Point mutation potential circulating variants Protective Quasispecies quasispecy raised reduced respiratory Respiratory system S gene S2 subunit SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 intra-host variability SARS-CoV-2 intra-host variant SARS-CoV-2 intra-host variants SARS-CoV-2 mutagenesis SARS-CoV-2 variant SARS-CoV-2 variants sensitivity Sequencing Sequencing database Sequencing databases single-genome sequencing Spike protein Spike proteins spike variant Spread swab sample swab samples the SARS-CoV-2 the spike protein vaccinated individuals vaccination rate variant variants variants of concern [DOI] 10.1371/journal.ppat.1010242 PMC 바로가기 [Article Type] Clinical Trial
SARS-CoV-2 Evolution and Spike-Specific CD4+ T-Cell Response in Persistent COVID-19 with Severe HIV Immune SuppressionCase Report Published on 2022-01-112022-10-29 Journal: Microorganisms [Category] COVID-19, [키워드] acute respiratory syndrome adaptive CD4+ CD4+ T cell response complex Control coronavirus coronavirus disease Course COVID-19 diagnosed Evolution HIV HIV-1 HIV-1 infection HIV-negative IL-2 immunological Immunosuppressed Infection Lineage B.1.1.7 marker Mutation Mycobacterium nasopharyngeal sample outcome persistence persistent Pneumonia polymerase chain reported response reverse transcription RNA SARS-CoV-2 SARS-CoV-2 evolution SARS-COV-2 infection severe COVID-19 suppression T-cell Response variant [DOI] 10.3390/microorganisms10010143 PMC 바로가기 [Article Type] Case Report
A Pre-Vaccination Baseline of SARS-CoV-2 Genetic Surveillance and Diversity in the United StatesSARS-COV-2 유전자 감시 및 미국의 다양성의 예방 접종 기준Article Published on 2022-01-072022-09-10 Journal: Viruses [Category] SARS, 변종, 치료기술, 치료제, [키워드] Administered Amino acid amino acid change amino acid changes Analysis conducted COVID-19 COVID-19 vaccine COVID-19 vaccines distributions Diversity expected frequencies Frequency Genetic genetic diversity geographical distributions immune pressure immunologically Infection linkage measure naïve Pathogens pre-vaccination remained RNA virus SARS-CoV-2 SARS-CoV-2 evolution SARS-CoV-2 in United States shifting Spread Support Surveillance the United State uniformity United States variants of concern Viral viral evolution virus spread VOCs widespread [DOI] 10.3390/v14010104 PMC 바로가기 [Article Type] Article
Intra-Host SARS-CoV-2 Evolution in the Gut of Mucosally-Infected Chlorocebus aethiops (African Green Monkeys)점막에 감염된 클로로세 부스 아티 옵스 (African Green Monkeys)의 장에서 호스트 내 SARS-COV-2 진화Brief Report Published on 2022-01-012022-09-10 Journal: Viruses [Category] 변종, 치료기술, [키워드] African African green monkey (Chlorocebus aethiops) African green monkeys Amino acid amino acid change Cell culture Chlorocebus collected D215G ENhance Evolution furin furin cleavage site green green monkeys H655Y Host human disease Humoral immunity identify in viral in vivo motif Mutation ORF rectal swab Rectal swabs respiratory RNA SARS-CoV-2 SARS-CoV-2 evolution SARS-COV-2 infection SARS-CoV-2 variant SARS-CoV-2 variants sequenced therapy trajectory Transmissibility Vaccine variant of SARS-CoV-2 Viral viral evolution viral infection Viral RNA virus [DOI] 10.3390/v14010077 PMC 바로가기 [Article Type] Brief Report