Sequence analysis for SNP detection and phylogenetic reconstruction of SARS-cov-2 isolated from Nigerian COVID-19 cases
Research article
[키워드] 2019-nCoV
3′UTR
accounted
addition
Analysis
average
base
causative pathogen
characteristic
characterized
clade
Clustering
community transmission
conserved
Coronaviridae
COVID-19
COVID-19 case
Culture
D614G
D614G mutation
disease
distribution
family
Frequency
GenBank
genome sequence
Genome sequence data
genomic
genomic region
genus Betacoronavirus
GISAID
GISAID database
highest
include
index case
Intensive
likelihood
Lineage
MAFFT
morbidity and mortality
Multiple
mutants
New coronavirus
Nigeria
Novel coronavirus
ORF10
ORF1ab
pandemic
Phylogenetic
Phylogenetic tree
Phylogeny
reference genome
Region
regions
Result
retrieved
SARS-CoV-2
SARS-CoV-2 genome
sequence
severe respiratory symptom
significantly higher
similarity
SNP
SNPs
spike gene
Treatment
Version
viral sequences
virus
was done
were used
widespread
[DOI] 10.1016/j.nmni.2022.100955 [Article Type] Research article
[DOI] 10.1016/j.nmni.2022.100955 [Article Type] Research article