VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBankSoftware Published on 2019-01-232023-08-28 Journal: BMC Bioinformatics [Category] E형 간염, [키워드] Data submission GenBank NCBI VAPiD Viral annotation viral genomics virus sequence [DOI] 10.1186/s12859-019-2606-y PMC 바로가기 [Article Type] Software
Analysis of the Genome Sequence and Prediction of B-Cell Epitopes of the Envelope Protein of Middle East Respiratory Syndrome-CoronavirusArticle Published on 2018-07-012022-10-29 Journal: IEEE/ACM transactions on computational biology and [Category] Coronavirus, MERS, [키워드] 3D structure amino acids sequence analyzed B cell epitope B-cell epitope bioinformatics China conserved database death E protein effective envelope epitope genome sequence highly antigenic Host Human identify IMPROVE Infection lack linear B-cell epitope MERS MERS-CoV Middle East NCBI nucleotide outbreak Pandemics Patient PDB predict predicted prediction Protein PyMol respiratory Sequence analysis significantly South Korea strain triggered Vaccine development was performed were used X-ray [DOI] 10.1109/TCBB.2017.2702588 PMC 바로가기 [Article Type] Article
Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platformSoftware Published on 2015-12-292022-10-27 Journal: BMC Bioinformatics [Category] Coronavirus, [키워드] addition Analysis analyzed annotation bioinformatics Biological center Chemical Community complex coronavirus creating detect Government homology Host identify Illumina Infectious disease Ion iterative NCBI Next-generation sequencing NGS pathogen pathogen detection platform provide Result sequence sequenced Sequencing supplementary material Support tested the United State utility variety zoonotic [DOI] 10.1186/s12859-015-0840-5 PMC 바로가기 [Article Type] Software
Molecular epidemiological study of feline coronavirus strains in Japan using RT-PCR targeting nsp14 geneMethodology Article Published on 2015-03-112022-10-28 Journal: BMC veterinary research [Category] Coronavirus, [키워드] addition Amino acid Analysis Blood caused clinically clone coding region conserved contribute coronavirus coronavirus strain detect develop Direct Epidemiological study Epidemiology fatal disease Feline coronavirus Feline infectious peritonitis genetic diversity Genome Genotype genotyping heterogeneous Infection Japan NCBI nsp14 PCR PCR method PCR product performed Phylogenetic analysis phylogenetic study phylogenetically predominant prevalent quasispecy Registered reported Result RT-PCR sequence Sequencing serotypes specimen strain Strains supplementary material TGEV type I variant variants virus detection WGS whole genome sequence [DOI] 10.1186/s12917-015-0372-2 PMC 바로가기 [Article Type] Methodology Article