nonsynonymous
[용어속성] Term
The surveillance of spike protein for patients with COVID-19 detected in Hong Kong in 2020
2020년 홍콩에서 검출된 COVID-19 환자를 위한 스파이크 단백질 감시
Article
[키워드] acute respiratory syndrome
acute respiratory syndrome coronavirus
acute respiratory syndrome coronavirus 2
Amino acid
amino acids
analyzed
coronavirus
coronavirus disease
Coronavirus disease 2019
COVID-19
COVID-19 case
COVID-19 cases
Early detection
Evolution
facilitate
GenBank accession
Genetic
genetic background
genetic change
genetic variability
genetics
Hong Kong
immunological
Mutation
nonsynonymous
nonsynonymous substitution
nonsynonymous substitutions
Patient
patients with COVID-19
Protein
reference sequence
reported
S protein
S proteins
SARS-CoV-2
SARS-CoV-2 virus
SARS-CoV-2 viruses
selected
sequence
sequenced
Spike protein
Surveillance
the S protein
time interval
vaccination
variant
variants
virus
virus classification
[DOI] 10.1002/jmv.27063 PMC 바로가기 [Article Type] Article
[DOI] 10.1002/jmv.27063 PMC 바로가기 [Article Type] Article
Molecular epidemiology analysis of early variants of SARS-CoV-2 reveals the potential impact of mutations P504L and Y541C (NSP13) in the clinical COVID-19 outcomes
SARS-CoV-2의 초기 변이체에 대한 분자 역학 분석은 임상 COVID-19 결과에서 돌연변이 P504L 및 Y541C(NSP13)의 잠재적 영향을 보여줍니다
Article
[키워드] acute respiratory syndrome
acute respiratory syndrome coronavirus
acute respiratory syndrome coronavirus 2
addition
aggregation
Amino acid
Amino acid variations
Analysis
analyzed
Canada
caused
Characteristics
clade
contribute
coronavirus
country
COVID-19
death
demonstrated
detect
Effect
Epidemiology
Evolution
Fatality rate
feature
functional
Genetic variation
Genetic variations
Genome
Genotype
global pandemic
identify
Infection
involved
Mutation
nonsynonymous
nsp13
ORF1
ORF1ab
outcome
outcomes
performed
Phylogenetic analysis
Phylogenetic tree
Prevent
proportion
Report date
Result
reveal
SARS-CoV-2
SARS-CoV-2 strain
SARS-CoV-2 strains
SARS-CoV-2 strains.
sequence
Sequence alignment
severe acute respiratory syndrome Coronavirus
state
strain
Strains
the United State
The United States
United States
variant
variants
variants of SARS-CoV-2
Variation
variations
virus
Washington
[DOI] 10.1016/j.meegid.2021.104831 PMC 바로가기 [Article Type] Article
[DOI] 10.1016/j.meegid.2021.104831 PMC 바로가기 [Article Type] Article
Multiplex SARS-CoV-2 Genotyping Reverse Transcriptase PCR for Population-Level Variant Screening and Epidemiologic Surveillance
인구 수준 변이 스크리닝 및 역학 감시를 위한 다중 SARS-CoV-2 유전자형 역전사효소 PCR
Article
[키워드] acute respiratory syndrome
acute respiratory syndrome coronavirus
acute respiratory syndrome coronavirus 2
among others
approach
Area
B.1.1.7
B.1.351
B.1.427
B.1.429
B.1.526
clinically
concerning
Concordance
coronavirus
COVID-19
detect
E484K
E484K mutation
E484K mutations
equipment
facilitate
failure rate
Genomic surveillance
Genotype
genotyping
Infection
L452R
Laboratory
large cohort
multiplex
Mutation
mutations
N501Y
N501Y mutation
NAAT
nonsynonymous
nucleic acid
nucleic acid amplification
nucleic acid amplification test
P.2 variants
pandemic
PCR
phenotypic
Prevalence
public health
qPCR
resource
reverse transcriptase
reverse transcriptase PCR
RT-qPCR
San Francisco
San Francisco Bay
SARS-CoV-2
SARS-CoV-2 variant
SARS-CoV-2-positive specimen
screened
Screening
Sequencing
severe acute respiratory syndrome Coronavirus
specificity
specimen
Spike protein
subset
Support
Surveillance
unique
variant
viral spike protein
whole-genome sequencing
[DOI] 10.1128/JCM.00859-21 PMC 바로가기 [Article Type] Article
[DOI] 10.1128/JCM.00859-21 PMC 바로가기 [Article Type] Article
Comparative study: nonsynonymous and synonymous substitution of SARS-CoV-2, SARS-CoV, and MERS-CoV genome
Original Article
[키워드] acute respiratory syndrome
Analysis
analyzed
Comparative
coronavirus
divergence time
dN/dS
Evolution
favor
Hypothesis
indicate
investigated
likelihood
MERS-CoV genome
Middle East
Neutral
nonsynonymous
nucleotide sequence
positive
proportion
Respiratory syndrome
respiratory syndrome coronavirus
Result
SARS-CoV
SARS-CoV-2
significantly
statistical
strain
Substitution
Support
syndrome
synonymous
synonymous and nonsynonymous change
transition/transversion ratio
Variation
viruses
[DOI] 10.5808/gi.20058 PMC 바로가기 [Article Type] Original Article
[DOI] 10.5808/gi.20058 PMC 바로가기 [Article Type] Original Article
V367F Mutation in SARS-CoV-2 Spike RBD Emerging during the Early Transmission Phase Enhances Viral Infectivity through Increased Human ACE2 Receptor Binding Affinity
초기 전파 단계에서 나타나는 SARS-CoV-2 스파이크 RBD의 V367F 돌연변이는 증가된 인간 ACE2 수용체 결합 친화도를 통해 바이러스 감염성을 향상시킵니다
Virus-Cell Interactions
[키워드] ACE2
ACE2 receptor
acute respiratory syndrome
acute respiratory syndrome coronavirus
acute respiratory syndrome coronavirus 2
affinity
Analysis
analyzed
angiotensin
assays
binding
binding affinity
caused
circulating
coronavirus
CoV
COVID-19
COVID-19 pandemic
Critical
domain
dominant
dominant mutations
drug
ELISA
enzyme-linked immunosorbent
enzyme-linked immunosorbent assay
Genome
genomes
hot spot
Human
human ACE2
human Angiotensin-converting enzyme
humans
in silico
Increased
indicated
infect
infectious
Infectivity
MDs
molecular dynamics
Molecular dynamics simulation
molecular dynamics simulations
mutant
Mutation
nonsynonymous
Novel coronavirus
pandemic of COVID-19
pangolin
pangolin CoV
phase
Phylogenetic analysis
provide
Pseudotyped virus
RBD
RBD mutation
RBD mutations
receptor
Receptor binding
Receptor-binding domain (RBD)
Recombination
Research
respiratory
SARS-CoV-2
SARS-CoV-2 isolate
SARS-CoV-2 isolates
SARS-CoV-2 RBD
SARS-CoV-2 spike protein
SARS-CoV-2 variant
selection pressure
severe acute respiratory syndrome Coronavirus
spike
spike mutation
spike mutations
Spike protein
Support
surface plasmon
surface plasmon resonance
Surveillance
sustained
the RBD
the SARS-CoV-2
trajectory
Transmission
V367F
Vaccine
Vaccines
variant
variants
Viral
viral infectivity
viral tropism
zoonotic infections
zoonotic origin
[DOI] 10.1128/JVI.00617-21 PMC 바로가기 [Article Type] Virus-Cell Interactions
[DOI] 10.1128/JVI.00617-21 PMC 바로가기 [Article Type] Virus-Cell Interactions
SARS-CoV-2 within-host diversity and transmission
SARS-CoV-2 호스트 내 다양성 및 전송
Research Article
[키워드] 95% CI
95% confidence interval
acute respiratory syndrome
acute respiratory syndrome coronavirus
acute respiratory syndrome coronavirus 2
antibody
antibody treatment
association
average
bottleneck
bottlenecks
carried
characterized
clinical sample
clinical samples
Coinfection
concerning
Consensus
consensus sequence
Contact
Contamination
coronavirus
cycle threshold
dataset
de novo mutation
de novo mutations
described
detectable
determinant
Diagram
dissemination
Diversity
dN/dS
early infection
Effect
eight
escape mutation
events
Evidence
explained
Extensive
First wave
fixation
fixed
functional
genetic diversity
Genetic variation
Genome sequencing
genomic
help
helping
high viral load
hospital
Host
Households
identify
Implications
indicate
individual
individuals
Infection
initiated
interquartile
iSNV
iSNVs
isolate
Limited genetic diversity
MAF
MAFs
mapped
minor allele frequency
mixed infection
MONITOR
MOST
Mutation
Narrow
nonsynonymous
nucleotide
observation
OC43
offer
pandemic
pandemic virus
Patient
pattern
persistence
Phylogenetic tree
phylogenetically
Phylogeny
Population
reached
replicate
researcher
respiratory
responsible
resulting
RNA sample
RNA samples
robust
SARS-CoV-2
SARS-COV-2 infection
SARS-CoV-2 infections
SARS-CoV-2 variant
SARS-CoV-2 variants
Science
sequenced
Sequencing
severe acute respiratory syndrome Coronavirus
shown
Single nucleotide variant
spike
spike gene
Spike protein
spike variants
Spread
subset
synonymous
the mean
the Spike
the spike protein
therapeutic
threshold
Transmissibility
Transmission
transmission cluster
transmission clusters
transmitted
United Kingdom
unlikely
Vaccine
variant
variant frequencies
variant frequency
variants
variants of concern
veSEQ
Viral
viral entry
viral evolution
viral infectivity
Viral load
viral loads
virus
viruses
Waves
were excluded
whole genome
[DOI] 10.1126/science.abg0821 PMC 바로가기 [Article Type] Research Article
[DOI] 10.1126/science.abg0821 PMC 바로가기 [Article Type] Research Article
Genetic variability in COVID-19-related genes in the Brazilian population
Article
[키워드] 1000 Genomes Project
1KGP
ABO
ACE2
ACE2 gene
Affect
allele frequency
Analysis
analyzed
angiotensin-converting enzyme 2
Brazil
Brazilian
Brazilians
candidate gene
CCR9
Clinical prognosis
contribute
country
COVID-19
COVID-19 case
COVID-19 infection
COVID-19 patients
COVID-19 severity
CTSL
CXCR6
database
disease
DQB1
DRB1
examined
Exome
exomes
explain
FYCO1
gene sequence
genetic background
genetic study
genetic variability
Genetic variation
Genome
gnomAD
help
highest
HLA allele
Host
host cells
human lung cells
identify
IL6
Immunity
implicated
individual
individual level
infect
Infection
infection with SARS-CoV-2
Influenza virus
information
International
investigated
life-threatening
loci
LZTFL1
nonsynonymous
Other
Patient
Phase 3
Pneumonia
Population
predicted
previous study
Protein
Rare variants
rate of infection
recent
receptor
recorded
reported
risk
SARS-CoV-2
SARS-COV-2 infection
Seven
shown
SLC6A20
suggested
susceptibility
therapeutic targets
TMPRSS2
transmembrane serine protease
type I interferon
unique
university
Variability
variant
Variation
viral infection
XCR1
[DOI] 10.1038/s41439-021-00146-w PMC 바로가기 [Article Type] Article
[DOI] 10.1038/s41439-021-00146-w PMC 바로가기 [Article Type] Article
One Year of SARS-CoV-2: How Much Has the Virus Changed?
Article
[키워드] 3D proteins
3D structure
A222V
accumulating
acute respiratory syndrome
Analysis
anticipated
caused
coronavirus
COVID-19
COVID-19 pandemic
COVID-19 vaccine
D614G
Effect
effective
Europe
exhibiting
GISAID
globe
group
highest
identify
Immune escape
initiative
L18F
likelihood
molecular analysis
mutant
Mutation
mutation rate
mutations
nonsynonymous
observé
over
P323L
pandemic
Protein
Proteins
proteome
provide
public health
reported
Research
resource
SARS-CoV-2
SARS-CoV-2 mutation
SARS-CoV-2 protein
SARS-CoV-2 proteins
SARS-CoV-2 proteome
sequence
simple
spike
Spread
Surveillance
target
the SARS-CoV-2
the SARS-CoV-2 virus
the Spike
therapy
These data
Vaccine
Variability
viral genome sequence
Viral protein
virus
worldwide crisis
Year
[DOI] 10.3390/biology10020091 PMC 바로가기 [Article Type] Article
[DOI] 10.3390/biology10020091 PMC 바로가기 [Article Type] Article
Intra-Host Diversity of SARS-Cov-2 Should Not Be Neglected: Case of the State of Victoria, Australia
Article
[키워드] acute respiratory syndrome
Analysis
changed
changes in
collected
coronavirus
COVID-19 pandemic
dataset
determine
Diversity
effort
epidemiological
Epidemiology
etiological agent
Evidence
Factor
Genes
Genetic
genetic bottleneck
genomic sequence
glycoprotein
greater
highlighting
Host
Intra-host diversity
Intra-host variant
iSNVs
less
lineages
magnitude
MONITOR
N genes
Next-generation sequencing
NGS
nonsynonymous
nonsynonymous iSNVs
nonsynonymous variant
ORF1a
ORF1b
pathogen
phylodynamic
Phylogenetic
Quasispecies
quasispecy
real time
RNA virus
SARS-CoV-2
SARS-CoV-2 gene
single-nucleotide
state
Transmission
variant
Victoria
virus
[DOI] 10.3390/v13010133 PMC 바로가기 [Article Type] Article
[DOI] 10.3390/v13010133 PMC 바로가기 [Article Type] Article