Molecular surveillance of malaria scales uparticle Published on 2021-12-312024-09-01 Journal: Trends in Parasitology [Category] 말라리아, [키워드] Amplicon sequencing Epidemiology Genome genotyping malaria [Article Type] article
Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling PipelinesSARS-COV-2 ORF8에서 168- 뉴클레오티드 결실의 다중 발생, 표준 앰플 리콘 시퀀싱 및 변형 호출 파이프 라인에 의해 눈에 띄지 않습니다.Article Published on 2021-09-182022-09-10 Journal: Viruses [Category] SARS, 변종, 치료기술, [키워드] Amplicon Amplicon sequencing amplicons analyzed ARTIC protocol classical coding region Consensus Data analysis database Deletion deletions ENA endemism Genome Genomic surveillance hospital hotspot identify infection chain infection chains investigated Lineage Local Multiple Mutation Nanopore nanopore sequencing nucleotide nucleotides ORF8 ORF8 deletion ORF8 gene outbreak Outbreaks pandemic Physiology Positive selection protocols raw data reported SARS-CoV-2 SARS-CoV-2 genome sequences SARS-CoV-2 pandemic SARS-CoV-2 sequence sequence Sequencing Standard the SARS-CoV-2 viral genomics virus virus genome [DOI] 10.3390/v13091870 PMC 바로가기 [Article Type] Article
Cotton and Surgical Face Masks in Community Settings: Bacterial Contamination and Face Mask HygieneMedicine Published on 2021-09-032022-10-31 Journal: Frontiers in Medicine [Category] COVID-19, [키워드] 16S rRNA gene 16S rRNA gene amplicon sequencing accumulate Acinetobacter Amplicon sequencing analyzed antibiotic Antwerp approach average Bacillus Bacteria Bacterial bacterial load biosafety Community Corona cotton COVID-19 COVID-19 pandemic cross-contamination Culture demonstrated evaluate face Face mask Face masks Flemish General population healthy volunteer increasingly indicated Intensive isolate laboratory result mandatory Mask Masks measure microbial community Microbiome nare nasal and skin microbiome Participants physical distancing preference question reduce reported Responder risk SARS-CoV-2 Staphylococcus Streptococcus surgical university Ventilation [DOI] 10.3389/fmed.2021.732047 PMC 바로가기 [Article Type] Medicine
Epigenetic Clocks Are Not Accelerated in COVID-19 PatientsCommunication Published on 2021-08-272022-10-29 Journal: International Journal of Molecular Sciences [Category] COVID-19, MERS, SARS, [키워드] 2019 coronavirus disease accelerated acute respiratory distress affected age Amplicon sequencing attrition Biomarker blood sample correlated COVID-19 dataset DNA methylation elderly patients Epigenetic epigenetic clocks higher risk Hypothesis investigated lymphocyte outcome Patient patients performed predict risk factor SARS-CoV-2 Severe COVID-19 Infection significantly syndrome telomere [DOI] 10.3390/ijms22179306 PMC 바로가기 [Article Type] Communication
Monitoring SARS-CoV-2 Populations in Wastewater by Amplicon Sequencing and Using the Novel Program SAM RefinerArticle Published on 2021-08-192022-10-28 Journal: Viruses [Category] COVID-19, SARS, [키워드] Amplicon Amplicon sequencing analyses B.1 B.1.1.7 chimeric computation coronavirus coronavirus 2 D614G domain function Gamma metagenomics Molecular epidemiology monitoring novel P.1 PCR polymerase chain Population Program respiratory SAM SARS-CoV-2 SARS-CoV-2 spike sequencing method Spread variant variants of concern variety viral population dynamics Viral variants wastewater [DOI] 10.3390/v13081647 PMC 바로가기 [Article Type] Article
Genome Sequences of 15 SARS-CoV-2 Sublineage B.1.617.2 Strains in BangladeshGenome Sequences Published on 2021-07-152022-10-29 Journal: Microbiology Resource Announcements [Category] COVID-19, [키워드] acute respiratory syndrome Amplicon sequencing approach ARTIC Network B.1.617.2 Community coronavirus genome sequence India individual nanopore sequencing SARS-CoV-2 sequence strain Travel [DOI] 10.1128/MRA.00560-21 PMC 바로가기 [Article Type] Genome Sequences
Cattle connection: molecular epidemiology of BVDV outbreaks via rapid nanopore whole-genome sequencing of clinical samplesResearch Published on 2021-07-122022-10-28 Journal: BMC veterinary research [Category] COVID-19, [키워드] Amplicon Amplicon sequencing amplicon-based sequencing bovine BVDV BVDV-1 BVDV-2 cattle clinical presentation clinical sample Complete Covering diarrhea genetic variability Genome genome coverage genomes identify limitation MinION Molecular epidemiology Nanopore nanopore sequencing outbreak pathogen PCR Pestivirus Phylogenetic analysis plasma presenting produced Protein protocol responsible Result sequence sequence information Sequencing strain Strains subtype Subtypes supplementary material the disease Tiling PCR titre variety Viral load virus was performed whole genomes whole-genome sequencing [DOI] 10.1186/s12917-021-02945-3 PMC 바로가기 [Article Type] Research
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environmentSARS-CoV-2 검출 상태는 환자 및 병원 환경의 박테리아 군집 구성과 관련이 있습니다.Research Published on 2021-06-082022-09-10 Journal: Microbiome [Category] MERS, SARS, 변종, 치료기술, [키워드] 16S rRNA 16S rRNA gene Accuracy Admission Amplicon sequencing antagonistic effect Bacterial Bacterial community bed rail built environment Care characterized Classifier collected Community complex coronavirus disease Coronavirus disease 2019 COVID-19 COVID-19 pandemic COVID-19 patient detectable forehead genus greater Health Health care highest hospital Hospital environment hospitalized patient hospitalized patients Host identify intensive care unit less microbial microbial community Microbiome nares Occurrence pandemic Patient patient rooms Phylogenetic positive positive sample predict predicted Prevalence profile profiles random Random forest responsible Result RNA virus rRNA RT-qPCR SARS-CoV-2 SARS-CoV-2 detection SARS-CoV-2 RNA SARS-CoV-2 RNA detection screened sequence Stool supplementary material synergistic the patient variant Viral Viral RNA viruses with COVID-19 [DOI] 10.1186/s40168-021-01083-0 PMC 바로가기 [Article Type] Research
Reversion of Gut Microbiota during the Recovery Phase in Patients with Asymptomatic or Mild COVID-19: Longitudinal StudyArticle Published on 2021-06-072022-10-29 Journal: Microorganisms [Category] COVID-19, [키워드] 16S rRNA Amplicon sequencing applied Asymptomatic Bacteroidetes changed COVID-19 determine Effect FB ratio Fecal sample Gastrointestinal symptom Gut gut microbiota healthy controls Infection intestinal longitudinal longitudinal analysis microbe Microbiome Mild Modifying Negative conversion Patient patients with asymptomatic phase profile reported respiratory infection respiratory symptoms reversion SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 RNA SARS-CoV2 selected significantly increased therapeutic Viral RNA was performed with COVID-19 [DOI] 10.3390/microorganisms9061237 PMC 바로가기 [Article Type] Article
Nasopharyngeal Microbiota in SARS-CoV-2 Positive and Negative PatientsShort Report Published on 2021-06-012022-10-27 Journal: Biological Procedures Online [Category] COVID-19, [키워드] 16S ribosomal RNA Amplicon sequencing Biomarker collected Community COVID-19 Disease progression Dysbiosis investigated microbial microbial community Microbiome microbiota nasopharyngeal negative patients profile Prognosis SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 testing supplementary material viral transport media [DOI] 10.1186/s12575-021-00148-6 PMC 바로가기 [Article Type] Short Report