Assessing clinical applicability of COVID-19 detection in chest radiography with deep learning Research Published on 2022-04-212022-10-05 Journal: Scientific Reports [Category] 치료기술, [키워드] Affect annotation applicability Assessing can be used Chest radiography Clinical finding collected complementary coronavirus disease COVID-19 COVID-19 patients CXR dataset datasets deep learning Disease progression Healthcare system hospital impacted manifestation Mild Multiple studies pandemic positive COVID-19 radiologist recent reported severe COVID-19 patients shown significantly increased subset [DOI] 10.1038/s41598-022-10568-3 [Article Type] Research
PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identificationArticle Published on 2022-04-132023-07-08 Journal: PeerJ [Category] COVID19(2023년), [키워드] annotation COVID19 Genomics Pipeline SARSCoV2 Variant identification virus [DOI] 10.7717/peerj.13300 PMC 바로가기
Tracking changes between preprint posting and journal publication during a pandemicMeta-Research Article Published on 2022-02-012022-10-28 Journal: PLoS Biology [Category] COVID-19, COVID19(2023년), MERS, SARS, [키워드] Abstract annotation articles change changed Combination comparable COVID-19 COVID-19 pandemic information initial majority pandemic press question reliability representing reveal scrutiny undergo utilised widespread [DOI] 10.1371/journal.pbio.3001285 PMC 바로가기 [Article Type] Meta-Research Article
SARS‐CoV‐2 triggered oxidative stress and abnormal energy metabolism in gut microbiotaOriginal Article Published on 2022-01-172022-10-30 Journal: MedComm [Category] COVID-19, [키워드] ABC accompanied Actinomyce alteration Amino acid analyzed annotation Antiviral Bacteria Bacteroide Biomarkers Butyrate characteristic characterized collected controls correlated COVID‐19 COVID‐19 patient COVID‐19 Critical Defense disease severity energy metabolism ENhance Escherichia coli exacerbate expression Fecal sample functions genes encoding Gut gut microbiota indicated Infection inflammation response Inflammatory intestinal flora KEGG Kyoto mechanism metabolism metagenome metagenomic metatranscriptome metatranscriptomic microbe Microbiome Neutral Ontology oxidative stress pathogen pathway positively correlated progression reduced SARS‐CoV‐2 SARS‐CoV‐2 virus SARS‐CoV‐2 selected Sequencing severity significantly Specific sphingolipids Streptococcus sugar suggested triggered upregulated upregulation was performed [DOI] 10.1002/mco2.112 PMC 바로가기 [Article Type] Original Article
The reactome pathway knowledgebase 2022AcademicSubjects/SCI00010 Published on 2022-01-072022-10-31 Journal: Nucleic Acids Research [Category] COVID-19, [키워드] acquired disease Analysis analyzed annotation biological processe caused coronavirus curated dataset disease-associated drug ELIXIR function functional gene expression profile host response humans Infection molecular Mutation New pathway Pathways physiological Protein provide recent resource SARS-CoV-1 SARS-CoV-2 Signaling Support tumor cells [DOI] 10.1093/nar/gkab1028 PMC 바로가기 [Article Type] AcademicSubjects/SCI00010
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 dataEnsembl COVID-19 리소스: 공개 SARS-CoV-2 데이터의 지속적인 통합AcademicSubjects/SCI00010 Published on 2022-01-072022-09-10 Journal: Nucleic Acids Research [Category] SARS, 변종, [키워드] aligned annotation browser content cornerstone COVID-19 COVID-19 pandemic Effect Efficacy epidemiological genomic information platform resource SARS-CoV-2 SARS-CoV-2 genome SARS-CoV-2 genome sequencing SARS-CoV-2 research Support the disease understanding Vaccine variant variants virus [DOI] 10.1093/nar/gkab889 PMC 바로가기 [Article Type] AcademicSubjects/SCI00010
Omicron: a drug developer’s perspectiveOmicron : 약물 개발자의 관점Coronaviruses Published on 2022-01-042022-08-31 Journal: Emerging Microbes & Infections [Category] COVID19(2023년), SARS, 변종, 신약개발, 치료제, [키워드] Analysis annotation antiviral drugs COVID19 COVID19drugs COVID19vaccines CURB effective Evolution immune evasion indicate Mutation novel antiviral drug novel antiviral drugs omicron Omicron variants pandemic performed Perspective SARS-CoV-2 selective Spike protein the SARS-CoV-2 the spike protein Transmissibility Vaccine variant variants variants of SARS-CoV-2 Viral [DOI] 10.1080/22221751.2021.2023330 PMC 바로가기 [Article Type] Coronaviruses
Automatic Segmentation of Novel Coronavirus Pneumonia Lesions in CT Images Utilizing Deep-Supervised Ensemble Learning NetworkMedicine Published on 2022-01-032022-10-31 Journal: Frontiers in Medicine [Category] COVID-19, [키워드] alleviate annotation annotations assist Automatic Coronavirus pneumonia COVID-19 COVID-19 lesion segmentation dataset deep learning deep-supervised ensemble learning network Diagnosis Effectiveness experiment Experimental result feature Image indicated intersection over union learning lesion living environment Local local and global features network novel coronavirus disease novel coronavirus pneumonia overcome overfitting Quantitative Segmentation Spread transfer transfer learning Treatment under CT imaging [DOI] 10.3389/fmed.2021.755309 PMC 바로가기 [Article Type] Medicine
Identification of Differentially Expressed Genes in COVID-19 and Integrated Bioinformatics Analysis of Signaling PathwaysCOVID-19에서 차별적으로 발현되는 유전자의 식별 및 신호 전달 경로의 통합 생물정보학 분석Research Article Published on 2021-12-242022-09-10 Journal: Genetics Research [Category] MERS, SARS, 유전자 메커니즘, [키워드] Analysis analyzed annotation bioinformatics cause CD69 cellular response chromosome complications coronavirus coronavirus disease Coronavirus disease 2019 COVID-19 Cutoff CXCR4 cytokine cytokine production DAVID DEGs Diabetic diabetic complications Diagnosis Differentially expressed genes downregulated enrichment FN1 FoxO FOXP3 gene expression profile Gene ontology GO terms group GSEA help HLA-G hub genes identification IL-17 immune response involved ISG15 KEGG Kyoto leukocyte lung tissue mechanism MMP9 myeloid leukocyte necrotic necrotic cell death nuclear other disease pathway Pathways Pneumonia positive potential mechanisms potential molecular PPI protein-protein interaction RAGE Regulation Research screened selected signaling pathway target Treatment type I interferon upregulated Visualization [DOI] 10.1155/2021/2728757 PMC 바로가기 [Article Type] Research Article
Pulmonary lesion subtypes recognition of COVID-19 from radiomics data with three-dimensional texture characterization in computed tomography images컴퓨터 단층 촬영 이미지에서 3 차원 텍스처 특성을 가진 방사선 데이터에서 Covid-19의 폐 병변 하위 유형 인식Research Published on 2021-12-052022-09-10 Journal: BioMedical Engineering OnLine [Category] SARS, 치료기술, [키워드] (Computed Tomography (Random Forest 3D texture feature Accuracy adaptive aggregate Algorithm annotation applied approach auxiliary changes in classification Classifier clinician Computed tomography CORD COVID-19 COVID-19 disease COVID-19 patient Critical dataset detect Diagnosis Diagnostic method experimental results Express feature Features GGO global healthcare ground-glass opacity help Hybrid adaptive feature selection identify identifying information initial lesion Lesion subtypes lesions Patient PCR test predict pulmonary Radiologists Radiomics random Random forest recall Research Result selected severity of COVID-19 shape subtype Subtypes traditional method traditional methods Treatment Volume [DOI] 10.1186/s12938-021-00961-w PMC 바로가기 [Article Type] Research